RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 XAGE1AQ9HD64 81 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 SAR1AQ9NR31 198 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 SCN3BQ9NY72 215 aa1.27□□□□□ -2.21
VPS13A-210ENST00000471439 TMEM238C9JI98 176 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 ERC2-IT1O76042 136 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 FGF7P21781 194 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 S100A4P26447 101 aaKnown RBP1.26□□□□□ -2.21
VPS13A-210ENST00000471439 S100GP29377 79 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 PDE6HQ13956 83 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 C5orf38Q86SI9 138 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 TMEM126AQ9H061 195 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 ATG5Q9H1Y0 275 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 EFCAB1Q9HAE3 211 aa1.26□□□□□ -2.21
VPS13A-210ENST00000471439 SPANXB1Q9NS25 103 aaPredicted RBP1.26□□□□□ -2.21
VPS13A-210ENST00000471439 PAIP2BQ9ULR5 123 aaKnown RBP1.26□□□□□ -2.21
VPS13A-210ENST00000471439 A8MUN3 132 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 H3BVH4 76 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 PYYP10082 97 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 FOXA3P55318 350 aaPredicted RBP1.25□□□□□ -2.21
VPS13A-210ENST00000471439 DEFA3P59666 94 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 MLLT11Q13015 90 aaPredicted RBP1.25□□□□□ -2.21
VPS13A-210ENST00000471439 C10orf113Q5VZT2 155 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 MAP1LC3AQ9H492 121 aa1.25□□□□□ -2.21
VPS13A-210ENST00000471439 FAM236AA0A1B0GUQ0 79 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 FAM236BA0A1B0GV22 79 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 ZNF727A8MUV8 499 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 EDF1O60869 148 aaKnown RBP1.24□□□□□ -2.21
VPS13A-210ENST00000471439 RPL12P30050 165 aaKnown RBP1.24□□□□□ -2.21
VPS13A-210ENST00000471439 SLC38A11Q08AI6 406 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 COMMD7Q86VX2 200 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 VCX3BQ9H321 246 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 FGFR1OP2Q9NVK5 253 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 TMEM242Q9NWH2 141 aa1.24□□□□□ -2.21
VPS13A-210ENST00000471439 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-210ENST00000471439 TRBV30A0A0K0K1B3 111 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 C3orf85A0A1B0GTC6 90 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 IGKV2-29A2NJV5 120 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-210ENST00000471439 H0YAA0 97 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 M0R378 163 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 NPYP01303 97 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 PMP2P02689 132 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 ARMS2P0C7Q2 107 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 CDC34P49427 236 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-210ENST00000471439 IAH1Q2TAA2 248 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-210ENST00000471439 C9orf153Q5TBE3 101 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 CCDC90BQ9GZT6 254 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 MED9Q9NWA0 146 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 ANAPC10Q9UM13 185 aa1.23□□□□□ -2.21
VPS13A-210ENST00000471439 MT1EP04732 61 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 UCHL1P09936 223 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 IAPPP10997 89 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 MT1GP13640 62 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 C2orf82Q6UX34 121 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 MT1MQ8N339 61 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 TMEM14CQ9P0S9 112 aa1.22□□□□□ -2.21
VPS13A-210ENST00000471439 C9orf170A2RU37 121 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 C1orf196B1AJZ1 125 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 H3BT86 120 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 H7C2G1 150 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 SSNA1O43805 119 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 SULT1A3P0DMM9 295 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 SULT1A4P0DMN0 295 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 COA5Q86WW8 74 aa1.21□□□□□ -2.22
VPS13A-210ENST00000471439 PLA2G10O15496 165 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 NBEAP1P0C6P0 100 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 DDTP30046 118 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 COTL1Q14019 142 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 KRTAP19-7Q3SYF9 63 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 NMES1Q9C002 83 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 CACFD1Q9UGQ2 172 aa1.2□□□□□ -2.22
VPS13A-210ENST00000471439 IRGMA1A4Y4 181 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 M0QY20 66 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 LST1O00453 97 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 TPT1P13693 172 aaKnown RBP1.19□□□□□ -2.22
VPS13A-210ENST00000471439 ZNF25P17030 456 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-210ENST00000471439 AQP4P55087 323 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 TMEM258P61165 79 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 RRAS2P62070 204 aaPredicted RBP1.19□□□□□ -2.22
VPS13A-210ENST00000471439 RANP62826 216 aaKnown RBP1.19□□□□□ -2.22
VPS13A-210ENST00000471439 GOLT1AQ6ZVE7 132 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 HYLS1Q96M11 299 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 Q96NJ1 140 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 CDC42SE2Q9NRR3 84 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 NAT8Q9UHE5 227 aa1.19□□□□□ -2.22
VPS13A-210ENST00000471439 DEFA1P59665 94 aa1.18□□□□□ -2.22
VPS13A-210ENST00000471439 RAB14P61106 215 aa1.18□□□□□ -2.22
VPS13A-210ENST00000471439 WHAMMP3Q1A5X7 153 aa1.18□□□□□ -2.22
VPS13A-210ENST00000471439 SLC51BQ86UW2 128 aa1.18□□□□□ -2.22
VPS13A-210ENST00000471439 C12orf45Q8N5I9 185 aaPredicted RBP1.18□□□□□ -2.22
VPS13A-210ENST00000471439 TERB2Q8NHR7 220 aa1.18□□□□□ -2.22
VPS13A-210ENST00000471439 TRAV7A0A075B6U4 112 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 TRAV13-1A0A0B4J241 112 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 IFITM5A6NNB3 132 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 PPBPP02775 128 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 MYL12AP19105 171 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 SMCO1Q147U7 214 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 SPANXN5Q5MJ07 72 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 MIC13Q5XKP0 118 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 SOSTDC1Q6X4U4 206 aa1.17□□□□□ -2.22
VPS13A-210ENST00000471439 TMEM91Q6ZNR0 172 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms