RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 SFTA2Q6UW10 78 aa3.81□□□□□ -1.8
USP39-213ENST00000467885 Q6ZRP5 223 aa3.81□□□□□ -1.8
USP39-213ENST00000467885 C2orf91Q6ZV80 131 aa3.81□□□□□ -1.8
USP39-213ENST00000467885 ARL17AQ8IVW1 177 aa3.81□□□□□ -1.8
USP39-213ENST00000467885 ERG28Q9UKR5 140 aa3.81□□□□□ -1.8
USP39-213ENST00000467885 DNAH11Q96DT5 4516 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.8□□□□□ -1.8
USP39-213ENST00000467885 A0A0U1RRA0 63 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 LINC00587B1AMM8 73 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 NDUFC2-KCTD14E9PQ53 114 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 PANO1I0J062 215 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 PFN2P35080 140 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 LINC00158P58513 81 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 KRTAP7-1Q8IUC3 87 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 CARD19Q96LW7 228 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 HIGD1BQ9P298 99 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 FAT2Q9NYQ8 4349 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 PKD1P98161 4303 aa3.8□□□□□ -1.8
USP39-213ENST00000467885 IGLV5-52A0A0A0MRZ9 124 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 EPM2AB3EWF7 344 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 KRTAP10-1P60331 282 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 CIRBPQ14011 172 aaKnown RBP3.79□□□□□ -1.8
USP39-213ENST00000467885 C9orf129Q5T035 196 aaKnown RBP3.79□□□□□ -1.8
USP39-213ENST00000467885 SOSTDC1Q6X4U4 206 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 MUSTN1Q8IVN3 82 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 MIR7-3HGQ8N6C7 128 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 DAND5Q8N907 189 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 SND1-IT1Q9HBX3 110 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 SPANXB1Q9NS25 103 aaPredicted RBP3.79□□□□□ -1.8
USP39-213ENST00000467885 FAM30AQ9NZY2 134 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 UQCR10Q9UDW1 63 aa3.79□□□□□ -1.8
USP39-213ENST00000467885 LOC107984640A0A0U1RRK4 108 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 A0A1W2PNN7 141 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 C16orf90A8MZG2 172 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 GCSHP23434 173 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 PRR3P79522 188 aaKnown RBP3.78□□□□□ -1.8
USP39-213ENST00000467885 MEIG1Q5JSS6 88 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 SCGB1D4Q6XE38 83 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 Q6ZVH6 145 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 Q8NDZ9 215 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 LINC00308Q8TCZ7 52 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 SPANXDQ9BXN6 97 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 XAGE1AQ9HD64 81 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 SPANXCQ9NY87 97 aa3.78□□□□□ -1.8
USP39-213ENST00000467885 A0A096LNI7 61 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 CHTF8P0CG12 524 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 GAGE2BQ13066 116 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 SRSF9Q13242 221 aaKnown RBP eCLIP3.77□□□□□ -1.81
USP39-213ENST00000467885 TAL2Q16559 108 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 GAGE2EQ4V326 116 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 PPDPFQ9H3Y8 114 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 GAGE2DQ9UEU5 116 aa3.77□□□□□ -1.81
USP39-213ENST00000467885 FAM168BA1KXE4 195 aa3.76□□□□□ -1.81
USP39-213ENST00000467885 IFITM1P13164 125 aa3.76□□□□□ -1.81
USP39-213ENST00000467885 CTAG1AP78358 180 aa3.76□□□□□ -1.81
USP39-213ENST00000467885 Q6ZSA8 131 aa3.76□□□□□ -1.81
USP39-213ENST00000467885 FRAS1Q86XX4 4008 aa3.76□□□□□ -1.81
USP39-213ENST00000467885 IGKV2-28A0A075B6P5 120 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 B5MCH6 92 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 TMEM238C9JI98 176 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 TSTD3H0UI37 97 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 IGKV2D-28P01615 120 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 VPREB1P12018 145 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 DDTP30046 118 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 XGP55808 180 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 NPC2P61916 151 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 SERTAD4-AS1Q5TG53 156 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 CEND1Q8N111 149 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 DPH3Q96FX2 82 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 HIST1H4GQ99525 98 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 C22orf24Q9Y442 160 aa3.75□□□□□ -1.81
USP39-213ENST00000467885 IGLV5-37A0A075B6J1 123 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 A0A087WYN8 130 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 IGKV2-24A0A0C4DH68 120 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 NDUFC2O95298 119 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 CFC1BP0CG36 223 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 CFC1P0CG37 223 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 HNRNPA3P51991 378 aaKnown RBP3.74□□□□□ -1.81
USP39-213ENST00000467885 RPL18AQ02543 176 aaKnown RBP3.74□□□□□ -1.81
USP39-213ENST00000467885 BVES-AS1Q5T3Y7 98 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 SPACA4Q8TDM5 124 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 PLAC8Q9NZF1 115 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 LINC00474Q9P2X8 69 aa3.74□□□□□ -1.81
USP39-213ENST00000467885 FXYD2P54710 66 aa3.73□□□□□ -1.81
USP39-213ENST00000467885 HSD52Q0P140 79 aa3.73□□□□□ -1.81
USP39-213ENST00000467885 KRTAP11-1Q8IUC1 163 aa3.73□□□□□ -1.81
USP39-213ENST00000467885 CIRBP-AS1Q8TBR5 109 aa3.73□□□□□ -1.81
USP39-213ENST00000467885 TRBV10-2A0A0K0K1G8 114 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 A0A1B0GWB2 263 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 PCP4L1A6NKN8 68 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 M0R378 163 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 HINT1P49773 126 aaPredicted RBP3.72□□□□□ -1.81
USP39-213ENST00000467885 RPL24P83731 157 aaKnown RBP3.72□□□□□ -1.81
USP39-213ENST00000467885 LINC00167Q96N53 147 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 PKIGQ9Y2B9 76 aa3.72□□□□□ -1.81
USP39-213ENST00000467885 DYNC1H1Q14204 4646 aaKnown RBP3.71□□□□□ -1.81
USP39-213ENST00000467885 IGLV1-50A0A075B6I6 118 aa3.71□□□□□ -1.82
USP39-213ENST00000467885 IGLV6-57P01721 117 aa3.71□□□□□ -1.82
USP39-213ENST00000467885 PHF5AQ7RTV0 110 aaKnown RBP3.71□□□□□ -1.82
USP39-213ENST00000467885 LINC00337Q8N6G1 96 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms