RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 IGHV6-1A0A0B4J1U7 121 aa13.2□□□□□ -0.3
CCDC88B-204ENST00000463837 Q9UF83 564 aa13.19□□□□□ -0.3
CCDC88B-204ENST00000463837 C4orf26Q17RF5 130 aa13.18□□□□□ -0.3
CCDC88B-204ENST00000463837 Q6ZQT0 140 aa13.18□□□□□ -0.3
CCDC88B-204ENST00000463837 PTPRBP23467 1997 aa13.18□□□□□ -0.3
CCDC88B-204ENST00000463837 PKD1L2Q7Z442 2459 aa13.17□□□□□ -0.3
CCDC88B-204ENST00000463837 C1orf134Q5TEV5 83 aa13.17□□□□□ -0.3
CCDC88B-204ENST00000463837 FSHBP01225 129 aa13.16□□□□□ -0.3
CCDC88B-204ENST00000463837 ELOF1P60002 83 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-204ENST00000463837 SMIM29Q86T20 159 aa13.14□□□□□ -0.31
CCDC88B-204ENST00000463837 LIMD2Q9BT23 127 aa13.14□□□□□ -0.31
CCDC88B-204ENST00000463837 FHL3Q13643 280 aa13.12□□□□□ -0.31
CCDC88B-204ENST00000463837 KIAA0087Q14695 138 aa13.12□□□□□ -0.31
CCDC88B-204ENST00000463837 FASNP49327 2511 aaKnown RBP13.11□□□□□ -0.31
CCDC88B-204ENST00000463837 CIRBP-AS1Q8TBR5 109 aa13.1□□□□□ -0.31
CCDC88B-204ENST00000463837 C6orf48Q9UBA6 75 aa13.1□□□□□ -0.31
CCDC88B-204ENST00000463837 COL27A1Q8IZC6 1860 aaPredicted RBP13.09□□□□□ -0.31
CCDC88B-204ENST00000463837 PRLHP81277 87 aa13.09□□□□□ -0.31
CCDC88B-204ENST00000463837 C22orf24Q9Y442 160 aa13.09□□□□□ -0.31
CCDC88B-204ENST00000463837 RETNLBQ9BQ08 111 aa13.07□□□□□ -0.32
CCDC88B-204ENST00000463837 LINC01556Q5JQF7 62 aa13.07□□□□□ -0.32
CCDC88B-204ENST00000463837 C1orf64Q8NEQ6 169 aa13.06□□□□□ -0.32
CCDC88B-204ENST00000463837 SMCR5Q8TEV8 140 aa13.06□□□□□ -0.32
CCDC88B-204ENST00000463837 H3BPC8 53 aa13.06□□□□□ -0.32
CCDC88B-204ENST00000463837 H3BNG1 76 aa13.06□□□□□ -0.32
CCDC88B-204ENST00000463837 PCSK5Q92824 1860 aa13.04□□□□□ -0.32
CCDC88B-204ENST00000463837 SPTBN4Q9H254 2564 aa13.04□□□□□ -0.32
CCDC88B-204ENST00000463837 TP53AIP1Q9HCN2 124 aa13.03□□□□□ -0.32
CCDC88B-204ENST00000463837 GVQW2A0A096LPI5 108 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-204ENST00000463837 ERC2-IT1O76042 136 aa13.02□□□□□ -0.33
CCDC88B-204ENST00000463837 Q8NBF4 154 aa13.01□□□□□ -0.33
CCDC88B-204ENST00000463837 X6R8D5 127 aa13□□□□□ -0.33
CCDC88B-204ENST00000463837 TM2D3Q9BRN9 247 aa12.99□□□□□ -0.33
CCDC88B-204ENST00000463837 MTORP42345 2549 aa12.99□□□□□ -0.33
CCDC88B-204ENST00000463837 MUC4Q99102 2169 aa12.99□□□□□ -0.33
CCDC88B-204ENST00000463837 LINC00167Q96N53 147 aa12.99□□□□□ -0.33
CCDC88B-204ENST00000463837 SPINK1P00995 79 aa12.98□□□□□ -0.33
CCDC88B-204ENST00000463837 Q6ZRX8 168 aa12.96□□□□□ -0.33
CCDC88B-204ENST00000463837 IGLV6-57P01721 117 aa12.96□□□□□ -0.34
CCDC88B-204ENST00000463837 MDFIQ99750 246 aa12.9□□□□□ -0.34
CCDC88B-204ENST00000463837 EIF4EBP3O60516 100 aaPredicted RBP12.9□□□□□ -0.34
CCDC88B-204ENST00000463837 LINC00476Q8WZB0 136 aa12.88□□□□□ -0.35
CCDC88B-204ENST00000463837 TRBV7-4A0A0J9YYF1 115 aa12.87□□□□□ -0.35
CCDC88B-204ENST00000463837 KLKP1Q107X0 134 aa12.86□□□□□ -0.35
CCDC88B-204ENST00000463837 VPREB1P12018 145 aa12.85□□□□□ -0.35
CCDC88B-204ENST00000463837 POLQO75417 2590 aa12.85□□□□□ -0.35
CCDC88B-204ENST00000463837 SPAG11AQ6PDA7 123 aa12.85□□□□□ -0.35
CCDC88B-204ENST00000463837 KRTAP24-1Q3LI83 254 aa12.84□□□□□ -0.35
CCDC88B-204ENST00000463837 LINC01600Q96MT4 127 aa12.83□□□□□ -0.36
CCDC88B-204ENST00000463837 ACYP2P14621 99 aa12.83□□□□□ -0.36
CCDC88B-204ENST00000463837 ST20-AS1Q8NBB2 130 aa12.82□□□□□ -0.36
CCDC88B-204ENST00000463837 TRAV22A0A0B4J277 110 aa12.82□□□□□ -0.36
CCDC88B-204ENST00000463837 Q8NAQ8 132 aa12.82□□□□□ -0.36
CCDC88B-204ENST00000463837 IGKV2D-30A0A075B6S6 120 aa12.8□□□□□ -0.36
CCDC88B-204ENST00000463837 IGKV2-30P06310 120 aa12.8□□□□□ -0.36
CCDC88B-204ENST00000463837 A0A1B0GU69 56 aa12.79□□□□□ -0.36
CCDC88B-204ENST00000463837 RPL37AP61513 92 aaKnown RBP12.77□□□□□ -0.36
CCDC88B-204ENST00000463837 CSNK1G2-AS1Q8NCQ2 148 aa12.77□□□□□ -0.37
CCDC88B-204ENST00000463837 LINC00528Q8N1L1 170 aa12.76□□□□□ -0.37
CCDC88B-204ENST00000463837 KCNQ1DNQ9H478 68 aa12.75□□□□□ -0.37
CCDC88B-204ENST00000463837 C16orf90A8MZG2 172 aa12.75□□□□□ -0.37
CCDC88B-204ENST00000463837 ACANP16112 2415 aa12.75□□□□□ -0.37
CCDC88B-204ENST00000463837 MOBPQ13875 183 aa12.75□□□□□ -0.37
CCDC88B-204ENST00000463837 Q6ZRP5 223 aa12.75□□□□□ -0.37
CCDC88B-204ENST00000463837 PRRC2CQ9Y520 2896 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-204ENST00000463837 EPG5Q9HCE0 2579 aa12.73□□□□□ -0.37
CCDC88B-204ENST00000463837 CYP4F30PQ9H0H9 118 aa12.72□□□□□ -0.37
CCDC88B-204ENST00000463837 C7orf65Q6ZTY9 151 aa12.72□□□□□ -0.37
CCDC88B-204ENST00000463837 A8MWP4 228 aa12.71□□□□□ -0.37
CCDC88B-204ENST00000463837 F8P00451 2351 aa12.71□□□□□ -0.38
CCDC88B-204ENST00000463837 EPM2AB3EWF7 344 aa12.7□□□□□ -0.38
CCDC88B-204ENST00000463837 PHF5AQ7RTV0 110 aaKnown RBP12.7□□□□□ -0.38
CCDC88B-204ENST00000463837 LINC00336Q6ZUF6 198 aa12.7□□□□□ -0.38
CCDC88B-204ENST00000463837 H7BZZ5 65 aa12.7□□□□□ -0.38
CCDC88B-204ENST00000463837 FAM229AH3BQW9 127 aa12.69□□□□□ -0.38
CCDC88B-204ENST00000463837 K7EQZ3 153 aa12.69□□□□□ -0.38
CCDC88B-204ENST00000463837 NBDYA0A0U1RRE5 68 aa12.69□□□□□ -0.38
CCDC88B-204ENST00000463837 PRR34Q9NV39 138 aa12.69□□□□□ -0.38
CCDC88B-204ENST00000463837 A8MUN3 132 aa12.68□□□□□ -0.38
CCDC88B-204ENST00000463837 DNAH10OSP0CZ25 163 aa12.68□□□□□ -0.38
CCDC88B-204ENST00000463837 IGLV1-50A0A075B6I6 118 aa12.68□□□□□ -0.38
CCDC88B-204ENST00000463837 UTRNP46939 3433 aa12.67□□□□□ -0.38
CCDC88B-204ENST00000463837 LOC101927531A0A1B0GV80 90 aa12.66□□□□□ -0.38
CCDC88B-204ENST00000463837 ANKRD17O75179 2603 aaKnown RBP12.66□□□□□ -0.38
CCDC88B-204ENST00000463837 LINC00612Q8N6U2 182 aa12.66□□□□□ -0.38
CCDC88B-204ENST00000463837 WWC2-AS2Q96NR7 200 aa12.66□□□□□ -0.38
CCDC88B-204ENST00000463837 OBSCN-AS1Q96MR7 158 aa12.64□□□□□ -0.39
CCDC88B-204ENST00000463837 DNAH12Q6ZR08 3092 aa12.63□□□□□ -0.39
CCDC88B-204ENST00000463837 LINC00588Q9Y4M8 146 aa12.63□□□□□ -0.39
CCDC88B-204ENST00000463837 ATP11AUNQ6ZP68 121 aa12.63□□□□□ -0.39
CCDC88B-204ENST00000463837 ZNF575Q86XF7 245 aa12.62□□□□□ -0.39
CCDC88B-204ENST00000463837 RTL8CO15255 209 aa12.62□□□□□ -0.39
CCDC88B-204ENST00000463837 SPACA4Q8TDM5 124 aa12.62□□□□□ -0.39
CCDC88B-204ENST00000463837 FAM168BA1KXE4 195 aa12.62□□□□□ -0.39
CCDC88B-204ENST00000463837 SERTAD4-AS1Q5TG53 156 aa12.62□□□□□ -0.39
CCDC88B-204ENST00000463837 C9orf129Q5T035 196 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-204ENST00000463837 GIG44P09565 113 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-204ENST00000463837 COA5Q86WW8 74 aa12.6□□□□□ -0.39
CCDC88B-204ENST00000463837 FLNBO75369 2602 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-204ENST00000463837 PLA2G2DQ9UNK4 145 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms