RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CDK2AP2O75956 126 aa6.43□□□□□ -1.38
UPF2-204ENST00000460569 XGP55808 180 aa6.43□□□□□ -1.38
UPF2-204ENST00000460569 MIEN1Q9BRT3 115 aa6.43□□□□□ -1.38
UPF2-204ENST00000460569 PLAC8Q9NZF1 115 aa6.43□□□□□ -1.38
UPF2-204ENST00000460569 LRP1BQ9NZR2 4599 aa6.43□□□□□ -1.38
UPF2-204ENST00000460569 M0QXV9 152 aa6.42□□□□□ -1.38
UPF2-204ENST00000460569 SERTAD4-AS1Q5TG53 156 aa6.42□□□□□ -1.38
UPF2-204ENST00000460569 NKAPP1Q8N9T2 125 aa6.41□□□□□ -1.38
UPF2-204ENST00000460569 SPANXDQ9BXN6 97 aa6.41□□□□□ -1.38
UPF2-204ENST00000460569 SPANXCQ9NY87 97 aa6.41□□□□□ -1.38
UPF2-204ENST00000460569 PLA2G2DQ9UNK4 145 aa6.41□□□□□ -1.38
UPF2-204ENST00000460569 VPREB1P12018 145 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 RPL24P83731 157 aaKnown RBP6.4□□□□□ -1.38
UPF2-204ENST00000460569 SRSF9Q13242 221 aaKnown RBP eCLIP6.4□□□□□ -1.38
UPF2-204ENST00000460569 SOSTDC1Q6X4U4 206 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 PHF5AQ7RTV0 110 aaKnown RBP6.4□□□□□ -1.38
UPF2-204ENST00000460569 KRTAP7-1Q8IUC3 87 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 Q8NDZ9 215 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 LINC00308Q8TCZ7 52 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 C12orf57Q99622 126 aa6.4□□□□□ -1.38
UPF2-204ENST00000460569 SPANXB1Q9NS25 103 aaPredicted RBP6.4□□□□□ -1.38
UPF2-204ENST00000460569 IGLV5-37A0A075B6J1 123 aa6.39□□□□□ -1.39
UPF2-204ENST00000460569 EPM2AB3EWF7 344 aa6.39□□□□□ -1.39
UPF2-204ENST00000460569 EIF4EBP3O60516 100 aaPredicted RBP6.39□□□□□ -1.39
UPF2-204ENST00000460569 Q6ZVH6 145 aa6.39□□□□□ -1.39
UPF2-204ENST00000460569 COPS9Q8WXC6 57 aa6.39□□□□□ -1.39
UPF2-204ENST00000460569 C22orf24Q9Y442 160 aa6.39□□□□□ -1.39
UPF2-204ENST00000460569 DNAH8Q96JB1 4490 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 LOC107984156A0A0G2JMH3 177 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 NCR3O14931 201 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 SMR3BP02814 79 aaPredicted RBP6.38□□□□□ -1.39
UPF2-204ENST00000460569 IFITM1P13164 125 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 C2orf91Q6ZV80 131 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 MRPL55Q7Z7F7 128 aaKnown RBP6.38□□□□□ -1.39
UPF2-204ENST00000460569 ARL17AQ8IVW1 177 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 C7orf33Q8WU49 177 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 HIST1H4GQ99525 98 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 PRO1933Q9H354 126 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 HIGD1BQ9P298 99 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 UQCR10Q9UDW1 63 aa6.38□□□□□ -1.39
UPF2-204ENST00000460569 GAGE10A6NGK3 116 aa6.37□□□□□ -1.39
UPF2-204ENST00000460569 UBE2BP63146 152 aa6.37□□□□□ -1.39
UPF2-204ENST00000460569 PRR3P79522 188 aaKnown RBP6.37□□□□□ -1.39
UPF2-204ENST00000460569 MUSTN1Q8IVN3 82 aa6.37□□□□□ -1.39
UPF2-204ENST00000460569 LINC00528Q8N1L1 170 aa6.37□□□□□ -1.39
UPF2-204ENST00000460569 APOBP04114 4563 aaKnown RBP6.36□□□□□ -1.39
UPF2-204ENST00000460569 NDUFC2O95298 119 aa6.36□□□□□ -1.39
UPF2-204ENST00000460569 LBHQ53QV2 105 aaPredicted RBP6.36□□□□□ -1.39
UPF2-204ENST00000460569 LINC00167Q96N53 147 aa6.36□□□□□ -1.39
UPF2-204ENST00000460569 M0R378 163 aa6.35□□□□□ -1.39
UPF2-204ENST00000460569 HNRNPA3P51991 378 aaKnown RBP6.35□□□□□ -1.39
UPF2-204ENST00000460569 LINC00518Q8N0U6 118 aa6.35□□□□□ -1.39
UPF2-204ENST00000460569 KRTAP3-3Q9BYR6 98 aa6.35□□□□□ -1.39
UPF2-204ENST00000460569 KRTAP3-2Q9BYR7 98 aa6.35□□□□□ -1.39
UPF2-204ENST00000460569 PPDPFQ9H3Y8 114 aa6.35□□□□□ -1.39
UPF2-204ENST00000460569 IGKV2-28A0A075B6P5 120 aa6.34□□□□□ -1.39
UPF2-204ENST00000460569 RPL37AP8A6NKH3 93 aa6.34□□□□□ -1.39
UPF2-204ENST00000460569 TSTD3H0UI37 97 aa6.34□□□□□ -1.39
UPF2-204ENST00000460569 IGKV2D-28P01615 120 aa6.34□□□□□ -1.39
UPF2-204ENST00000460569 TRBV10-2A0A0K0K1G8 114 aa6.33□□□□□ -1.4
UPF2-204ENST00000460569 RPL37AP61513 92 aaKnown RBP6.33□□□□□ -1.4
UPF2-204ENST00000460569 TAL2Q16559 108 aa6.33□□□□□ -1.4
UPF2-204ENST00000460569 TRBV10-3A0A0K0K1G6 114 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 A4D1N5 150 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 FAM229AH3BQW9 127 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 HSD52Q0P140 79 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 S100A7L2Q5SY68 101 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 Q5VSD8 79 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 KRTAP11-1Q8IUC1 163 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 OR13C6PQ8NH95 151 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 PSORS1C2Q9UIG4 136 aa6.32□□□□□ -1.4
UPF2-204ENST00000460569 BIRC6Q9NR09 4857 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 IGLV1-50A0A075B6I6 118 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 DDTP30046 118 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 CEND1Q8N111 149 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 Q8N1X5 172 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 LINC00337Q8N6G1 96 aa6.31□□□□□ -1.4
UPF2-204ENST00000460569 KIAA1109Q2LD37 5005 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 TMEM238LA0A1B0GVL6 79 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 A6NDN8 102 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 A6NJY4 79 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 PRYO14603 147 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 IGLV6-57P01721 117 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 PLA2G1BP04054 148 aaKnown RBP6.29□□□□□ -1.4
UPF2-204ENST00000460569 C1orf137Q5JT78 98 aa6.29□□□□□ -1.4
UPF2-204ENST00000460569 HSPG2P98160 4391 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 TRAV23DV6A0A075B6W5 121 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 TRAV13-2A0A0B4J235 113 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 FXYD2P54710 66 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 REG3GQ6UW15 175 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 KRTAP17-1Q9BYP8 105 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 TMEM126AQ9H061 195 aa6.28□□□□□ -1.4
UPF2-204ENST00000460569 CTAG1AP78358 180 aa6.27□□□□□ -1.41
UPF2-204ENST00000460569 KCNQ1DNQ9H478 68 aa6.27□□□□□ -1.41
UPF2-204ENST00000460569 CBY1Q9Y3M2 126 aa6.27□□□□□ -1.41
UPF2-204ENST00000460569 BCE1O60756 84 aa6.26□□□□□ -1.41
UPF2-204ENST00000460569 RPL13AP40429 203 aaKnown RBP6.26□□□□□ -1.41
UPF2-204ENST00000460569 KRTAP10-4P60372 401 aaPredicted RBP6.26□□□□□ -1.41
UPF2-204ENST00000460569 RAB37Q96AX2 223 aa6.26□□□□□ -1.41
UPF2-204ENST00000460569 RYR1P21817 5038 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms