RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CST9LQ9H4G1 147 aa4.24□□□□□ -1.73
VPS41-208ENST00000448833 TMEM218A2RU14 115 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 SMIM1B2RUZ4 78 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 COX17Q14061 63 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 PRR4Q16378 134 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 KIAA1644Q3SXP7 199 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 SEC11CQ9BY50 192 aa4.23□□□□□ -1.73
VPS41-208ENST00000448833 IGLV5-37A0A075B6J1 123 aa4.22□□□□□ -1.73
VPS41-208ENST00000448833 A0A0U1RQV1 116 aa4.22□□□□□ -1.73
VPS41-208ENST00000448833 RPL24P83731 157 aaKnown RBP4.22□□□□□ -1.73
VPS41-208ENST00000448833 FABP9Q0Z7S8 132 aa4.22□□□□□ -1.73
VPS41-208ENST00000448833 TYMSOSQ8TAI1 123 aa4.22□□□□□ -1.73
VPS41-208ENST00000448833 LINC00167Q96N53 147 aa4.22□□□□□ -1.73
VPS41-208ENST00000448833 RPL37AP8A6NKH3 93 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 ADCYAP1P18509 176 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 UBE2AP49459 152 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 RAB5BP61020 215 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 RHEBQ15382 184 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 FAM229BQ4G0N7 80 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 SVBPQ8N300 66 aa4.21□□□□□ -1.74
VPS41-208ENST00000448833 SNAPINO95295 136 aa4.2□□□□□ -1.74
VPS41-208ENST00000448833 APOC3P02656 99 aa4.2□□□□□ -1.74
VPS41-208ENST00000448833 SPINK8P0C7L1 97 aa4.2□□□□□ -1.74
VPS41-208ENST00000448833 LINC00614P0C842 121 aa4.2□□□□□ -1.74
VPS41-208ENST00000448833 NDUFA6P56556 154 aa4.2□□□□□ -1.74
VPS41-208ENST00000448833 LOC105371267A0A1B0GV96 52 aa4.19□□□□□ -1.74
VPS41-208ENST00000448833 IGLC3P0DOY3 106 aa4.19□□□□□ -1.74
VPS41-208ENST00000448833 PFN2P35080 140 aa4.19□□□□□ -1.74
VPS41-208ENST00000448833 LCE5AQ5TCM9 118 aa4.19□□□□□ -1.74
VPS41-208ENST00000448833 IGKV2D-26A0A0A0MRZ7 120 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 IGLV5-39A0A0G2JS06 123 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 TSPAN13O95857 204 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 HBDP02042 147 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 RPS10P5Q9NQ39 176 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 ERG28Q9UKR5 140 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 TRAPPC1Q9Y5R8 145 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 LPAP08519 4548 aa4.18□□□□□ -1.74
VPS41-208ENST00000448833 IGKV2-28A0A075B6P5 120 aa4.17□□□□□ -1.74
VPS41-208ENST00000448833 LINC00587B1AMM8 73 aa4.17□□□□□ -1.74
VPS41-208ENST00000448833 IGKV2D-28P01615 120 aa4.17□□□□□ -1.74
VPS41-208ENST00000448833 C10orf91Q5T1B1 145 aa4.17□□□□□ -1.74
VPS41-208ENST00000448833 SND1-IT1Q9HBX3 110 aa4.17□□□□□ -1.74
VPS41-208ENST00000448833 A0A087X002 238 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 ZNF22P17026 224 aaPredicted RBP4.16□□□□□ -1.74
VPS41-208ENST00000448833 TMEM170BQ5T4T1 132 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 SPAG11AQ6PDA7 123 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 FAM19A1Q7Z5A9 133 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 BAGE3Q86Y29 109 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 KRTAP13-1Q8IUC0 172 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 LINC00304Q8N9R0 145 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 C18orf32Q8TCD1 76 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 TMEM126AQ9H061 195 aa4.16□□□□□ -1.74
VPS41-208ENST00000448833 VPREB1P12018 145 aa4.15□□□□□ -1.75
VPS41-208ENST00000448833 ZNF706Q9Y5V0 76 aaPredicted RBP4.15□□□□□ -1.75
VPS41-208ENST00000448833 PCP4L1A6NKN8 68 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 B5MCH6 92 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 M0R378 163 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 LINC00158P58513 81 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 KRTAP19-4Q3LI73 84 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 CBLN2Q8IUK8 224 aa4.14□□□□□ -1.75
VPS41-208ENST00000448833 CHCHD1Q96BP2 118 aaKnown RBP4.14□□□□□ -1.75
VPS41-208ENST00000448833 A0A096LNJ9 63 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 TRAV12-1A0A0B4J245 112 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 C5orf52A6NGY3 159 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 C11orf86A6NJI1 115 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 HERV-K104P63124 156 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 KRTAP13-2Q52LG2 175 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 PLEKHB2Q96CS7 222 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 ZNF625Q96I27 306 aaPredicted RBP4.13□□□□□ -1.75
VPS41-208ENST00000448833 MAP1LC3CQ9BXW4 147 aa4.13□□□□□ -1.75
VPS41-208ENST00000448833 TMEM238C9JI98 176 aa4.12□□□□□ -1.75
VPS41-208ENST00000448833 PRLHP81277 87 aa4.12□□□□□ -1.75
VPS41-208ENST00000448833 TPRXLQ17RH7 258 aa4.12□□□□□ -1.75
VPS41-208ENST00000448833 IFI27L1Q96BM0 104 aa4.12□□□□□ -1.75
VPS41-208ENST00000448833 ANAPC11Q9NYG5 84 aa4.12□□□□□ -1.75
VPS41-208ENST00000448833 MYMXA0A1B0GTQ4 84 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 TMEM223A0PJW6 202 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 PRYO14603 147 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 SCO1O75880 301 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 PMCHL1Q16048 86 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 MEIG1Q5JSS6 88 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 LINC00337Q8N6G1 96 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 URB1-AS1Q96HZ7 61 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 HIGD2AQ9BW72 106 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 MUC2Q02817 5179 aa4.11□□□□□ -1.75
VPS41-208ENST00000448833 IGLV7-46A0A075B6I9 117 aa4.1□□□□□ -1.75
VPS41-208ENST00000448833 ETDCA0A1B0GVM5 59 aa4.1□□□□□ -1.75
VPS41-208ENST00000448833 HSBP1O75506 76 aa4.1□□□□□ -1.75
VPS41-208ENST00000448833 FP248Q71RG6 208 aaPredicted RBP4.1□□□□□ -1.75
VPS41-208ENST00000448833 BOD1L2Q8IYS8 172 aa4.1□□□□□ -1.75
VPS41-208ENST00000448833 KCNQ1DNQ9H478 68 aa4.1□□□□□ -1.75
VPS41-208ENST00000448833 SMIM13P0DJ93 91 aa4.09□□□□□ -1.75
VPS41-208ENST00000448833 SPRR4Q96PI1 79 aa4.09□□□□□ -1.75
VPS41-208ENST00000448833 A0A0U1RRA0 63 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 SPINK1P00995 79 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 PLNP26678 52 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 SPRR1AP35321 89 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 MIR7-3HGQ8N6C7 128 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 RETNLBQ9BQ08 111 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 MIEN1Q9BRT3 115 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms