RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SMIM11BQ8TCY0 68 aa4□□□□□ -1.77
VPS50-205ENST00000441602 PPDPFLQ8WWR9 84 aa4□□□□□ -1.77
VPS50-205ENST00000441602 NCR3O14931 201 aa4□□□□□ -1.77
VPS50-205ENST00000441602 GHRHP01286 108 aa4□□□□□ -1.77
VPS50-205ENST00000441602 TEN1Q86WV5 123 aa4□□□□□ -1.77
VPS50-205ENST00000441602 CLEC2BQ92478 149 aa4□□□□□ -1.77
VPS50-205ENST00000441602 LOC107984640A0A0U1RRK4 108 aa3.99□□□□□ -1.77
VPS50-205ENST00000441602 M0R378 163 aa3.99□□□□□ -1.77
VPS50-205ENST00000441602 NKAPP1Q8N9T2 125 aa3.99□□□□□ -1.77
VPS50-205ENST00000441602 PRO0461Q9UI25 63 aa3.99□□□□□ -1.77
VPS50-205ENST00000441602 ETDBQ3ZM63 59 aa3.99□□□□□ -1.77
VPS50-205ENST00000441602 FBN1P35555 2871 aaKnown RBP3.99□□□□□ -1.77
VPS50-205ENST00000441602 TLX1NBP0CAT3 122 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 RPL18AQ02543 176 aaKnown RBP3.98□□□□□ -1.77
VPS50-205ENST00000441602 GAGE2EQ4V326 116 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 GAGE2DQ9UEU5 116 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 NBDYA0A0U1RRE5 68 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 H3BQ85 93 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 XAGE1AQ9HD64 81 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 NOTCH1P46531 2555 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 NBEAL2Q6ZNJ1 2754 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 MTURNQ8N3F0 131 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 DIRC1Q969H9 104 aa3.98□□□□□ -1.77
VPS50-205ENST00000441602 VPS25Q9BRG1 176 aa3.97□□□□□ -1.77
VPS50-205ENST00000441602 LINC01600Q96MT4 127 aa3.97□□□□□ -1.77
VPS50-205ENST00000441602 CUBNO60494 3623 aa3.97□□□□□ -1.77
VPS50-205ENST00000441602 TRAV23DV6A0A075B6W5 121 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 BAALC-AS2P0C853 105 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 PLA2G2DQ9UNK4 145 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 GAGE2BQ13066 116 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 ORMDL1Q9P0S3 153 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 TRBV7-6A0A0J9YX20 115 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 LECT2O14960 151 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 IGLV6-57P01721 117 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 INAFM2P0DMQ5 153 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 VPREB1P12018 145 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 COX7BP24311 80 aa3.96□□□□□ -1.78
VPS50-205ENST00000441602 SMCPP49901 116 aaPredicted RBP3.95□□□□□ -1.78
VPS50-205ENST00000441602 PRR3P79522 188 aaKnown RBP3.95□□□□□ -1.78
VPS50-205ENST00000441602 C6orf99Q4VX62 202 aa3.95□□□□□ -1.78
VPS50-205ENST00000441602 WWC2-AS2Q96NR7 200 aa3.95□□□□□ -1.78
VPS50-205ENST00000441602 TRBV10-3A0A0K0K1G6 114 aa3.95□□□□□ -1.78
VPS50-205ENST00000441602 CNBPP62633 177 aaKnown RBP3.95□□□□□ -1.78
VPS50-205ENST00000441602 CASC10Q5T4H9 136 aa3.94□□□□□ -1.78
VPS50-205ENST00000441602 Q6ZRP5 223 aa3.94□□□□□ -1.78
VPS50-205ENST00000441602 IGLV5-37A0A075B6J1 123 aa3.94□□□□□ -1.78
VPS50-205ENST00000441602 ZNF73O43830 326 aaPredicted RBP3.94□□□□□ -1.78
VPS50-205ENST00000441602 hADV29S1A0JD25 119 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 PRYO14603 147 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 KRTAP1-5Q9BYS1 174 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 LINC00474Q9P2X8 69 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 A0A087WYN8 130 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 TMEM256-PLSCR3K7ERE1 68 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 C21orf62-AS1Q17RA5 79 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 LINC00575Q6W349 94 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 Q8N814 137 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 FAM218AQ96MZ4 157 aa3.93□□□□□ -1.78
VPS50-205ENST00000441602 ETDCA0A1B0GVM5 59 aa3.92□□□□□ -1.78
VPS50-205ENST00000441602 C16orf90A8MZG2 172 aa3.92□□□□□ -1.78
VPS50-205ENST00000441602 JMJD7-PLA2G4BH0Y9G9 81 aa3.92□□□□□ -1.78
VPS50-205ENST00000441602 C3orf84H3BNL1 204 aa3.92□□□□□ -1.78
VPS50-205ENST00000441602 C9orf129Q5T035 196 aaKnown RBP3.92□□□□□ -1.78
VPS50-205ENST00000441602 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.92□□□□□ -1.78
VPS50-205ENST00000441602 TENM3Q9P273 2699 aa3.92□□□□□ -1.78
VPS50-205ENST00000441602 ACYP1P07311 99 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 C7orf33Q8WU49 177 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 LINC00167Q96N53 147 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.91□□□□□ -1.78
VPS50-205ENST00000441602 C1orf134Q5TEV5 83 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 M0R2N4 97 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 FAM19A5Q7Z5A7 132 aaPredicted RBP3.91□□□□□ -1.78
VPS50-205ENST00000441602 Q8NDZ9 215 aa3.91□□□□□ -1.78
VPS50-205ENST00000441602 LY6G6CO95867 125 aa3.9□□□□□ -1.78
VPS50-205ENST00000441602 SLPIP03973 132 aa3.9□□□□□ -1.78
VPS50-205ENST00000441602 ELOF1P60002 83 aaKnown RBP3.9□□□□□ -1.78
VPS50-205ENST00000441602 KCNQ1DNQ9H478 68 aa3.9□□□□□ -1.78
VPS50-205ENST00000441602 DHRS4-AS1Q9P1J3 65 aa3.9□□□□□ -1.78
VPS50-205ENST00000441602 MRPL55Q7Z7F7 128 aaKnown RBP3.9□□□□□ -1.79
VPS50-205ENST00000441602 C9orf163Q8N9P6 203 aa3.9□□□□□ -1.79
VPS50-205ENST00000441602 C22orf24Q9Y442 160 aa3.9□□□□□ -1.79
VPS50-205ENST00000441602 IGKV2-24A0A0C4DH68 120 aa3.9□□□□□ -1.79
VPS50-205ENST00000441602 TEX49A0A1B0GTD5 131 aa3.9□□□□□ -1.79
VPS50-205ENST00000441602 FAM240AA0A1B0GVK7 77 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 SERTAD4-AS1Q5TG53 156 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 DPH3Q96FX2 82 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 NBEAL1Q6ZS30 2694 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 TRRAPQ9Y4A5 3859 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 LAMTOR3Q9UHA4 124 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 DNAH3Q8TD57 4116 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 LRCOL1A6NCL2 159 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 PDE6GP18545 87 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 UBE2BP63146 152 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 Q6ZR54 194 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 SIGMAR1Q99720 223 aa3.89□□□□□ -1.79
VPS50-205ENST00000441602 A0A087WTM6 91 aa3.88□□□□□ -1.79
VPS50-205ENST00000441602 A0A096LNI7 61 aa3.88□□□□□ -1.79
VPS50-205ENST00000441602 Q6ZQY7 126 aa3.88□□□□□ -1.79
VPS50-205ENST00000441602 IGLV1-50A0A075B6I6 118 aa3.88□□□□□ -1.79
VPS50-205ENST00000441602 Q6ZRN7 208 aaPredicted RBP3.88□□□□□ -1.79
VPS50-205ENST00000441602 REG3GQ6UW15 175 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms