RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PFN2P35080 140 aa7.83□□□□□ -1.16
PTPRF-208ENST00000437607 LINC00158P58513 81 aa7.83□□□□□ -1.16
PTPRF-208ENST00000437607 LINC01620Q4KN68 170 aa7.83□□□□□ -1.16
PTPRF-208ENST00000437607 PKIGQ9Y2B9 76 aa7.83□□□□□ -1.16
PTPRF-208ENST00000437607 A0A0U1RRA0 63 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 SMIM13P0DJ93 91 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 RNF151Q2KHN1 245 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 C2orf91Q6ZV80 131 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 SCXQ7RTU7 201 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 HIGD1BQ9P298 99 aa7.82□□□□□ -1.16
PTPRF-208ENST00000437607 RPL18AQ02543 176 aaKnown RBP7.81□□□□□ -1.16
PTPRF-208ENST00000437607 COX17Q14061 63 aa7.81□□□□□ -1.16
PTPRF-208ENST00000437607 C9orf116Q5BN46 136 aaPredicted RBP7.81□□□□□ -1.16
PTPRF-208ENST00000437607 SPANXB1Q9NS25 103 aaPredicted RBP7.81□□□□□ -1.16
PTPRF-208ENST00000437607 SRSF9Q13242 221 aaKnown RBP eCLIP7.8□□□□□ -1.16
PTPRF-208ENST00000437607 MIR7-3HGQ8N6C7 128 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 COPS9Q8WXC6 57 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 HIST1H4GQ99525 98 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 SPANXDQ9BXN6 97 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 SPANXCQ9NY87 97 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 TNXBP22105 4242 aa7.8□□□□□ -1.16
PTPRF-208ENST00000437607 NDUFC2-KCTD14E9PQ53 114 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 SLPIP03973 132 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 DDTP30046 118 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 HSD52Q0P140 79 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 DAND5Q8N907 189 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 LITAFQ99732 161 aa7.79□□□□□ -1.16
PTPRF-208ENST00000437607 LOC107984640A0A0U1RRK4 108 aa7.78□□□□□ -1.16
PTPRF-208ENST00000437607 SERTAD4-AS1Q5TG53 156 aa7.78□□□□□ -1.16
PTPRF-208ENST00000437607 Q6ZVH6 145 aa7.78□□□□□ -1.16
PTPRF-208ENST00000437607 PCP4L1A6NKN8 68 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 TLX1NBP0CAT3 122 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 IFITM1P13164 125 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 NPC2P61916 151 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 TAL2Q16559 108 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 CIRBP-AS1Q8TBR5 109 aa7.77□□□□□ -1.17
PTPRF-208ENST00000437607 ADAMTSL4-AS1Q5T5F5 129 aa7.76□□□□□ -1.17
PTPRF-208ENST00000437607 C9orf163Q8N9P6 203 aa7.76□□□□□ -1.17
PTPRF-208ENST00000437607 M0R143 59 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 OXTP01178 125 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 CTAG1AP78358 180 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 GAGE2BQ13066 116 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 GAGE2EQ4V326 116 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 SND1-IT1Q9HBX3 110 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 GAGE2DQ9UEU5 116 aa7.75□□□□□ -1.17
PTPRF-208ENST00000437607 TMEM238LA0A1B0GVL6 79 aa7.74□□□□□ -1.17
PTPRF-208ENST00000437607 A6NJY4 79 aa7.74□□□□□ -1.17
PTPRF-208ENST00000437607 RPL24P83731 157 aaKnown RBP7.74□□□□□ -1.17
PTPRF-208ENST00000437607 Q6ZRP5 223 aa7.74□□□□□ -1.17
PTPRF-208ENST00000437607 LINC00308Q8TCZ7 52 aa7.74□□□□□ -1.17
PTPRF-208ENST00000437607 CEND1Q8N111 149 aa7.73□□□□□ -1.17
PTPRF-208ENST00000437607 XAGE1AQ9HD64 81 aa7.73□□□□□ -1.17
PTPRF-208ENST00000437607 A0A096LNI7 61 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 IGKV2-24A0A0C4DH68 120 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 PTTG1IPP53801 180 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 SOSTDC1Q6X4U4 206 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 MUSTN1Q8IVN3 82 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 PPDPFQ9H3Y8 114 aa7.72□□□□□ -1.17
PTPRF-208ENST00000437607 HINT1P49773 126 aaPredicted RBP7.71□□□□□ -1.18
PTPRF-208ENST00000437607 LINC00474Q9P2X8 69 aa7.71□□□□□ -1.18
PTPRF-208ENST00000437607 PLA2G2DQ9UNK4 145 aa7.71□□□□□ -1.18
PTPRF-208ENST00000437607 FXYD2P54710 66 aa7.7□□□□□ -1.18
PTPRF-208ENST00000437607 BATFQ16520 125 aa7.7□□□□□ -1.18
PTPRF-208ENST00000437607 A4D1N5 150 aa7.69□□□□□ -1.18
PTPRF-208ENST00000437607 C9orf129Q5T035 196 aaKnown RBP7.69□□□□□ -1.18
PTPRF-208ENST00000437607 BVES-AS1Q5T3Y7 98 aa7.69□□□□□ -1.18
PTPRF-208ENST00000437607 LOC107984156A0A0G2JMH3 177 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 EIF4EBP3O60516 100 aaPredicted RBP7.68□□□□□ -1.18
PTPRF-208ENST00000437607 CHTF8P0CG12 524 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 LRP2P98164 4655 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 SDIM1Q6ZPB5 146 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 ARL17AQ8IVW1 177 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 NKAPP1Q8N9T2 125 aa7.68□□□□□ -1.18
PTPRF-208ENST00000437607 A6NDN8 102 aa7.67□□□□□ -1.18
PTPRF-208ENST00000437607 NCR3O14931 201 aa7.67□□□□□ -1.18
PTPRF-208ENST00000437607 NDUFC2O95298 119 aa7.67□□□□□ -1.18
PTPRF-208ENST00000437607 RPL37AP61513 92 aaKnown RBP7.67□□□□□ -1.18
PTPRF-208ENST00000437607 FAM19A5Q7Z5A7 132 aaPredicted RBP7.67□□□□□ -1.18
PTPRF-208ENST00000437607 NHP2Q9NX24 153 aaKnown RBP7.67□□□□□ -1.18
PTPRF-208ENST00000437607 RNF213Q63HN8 5207 aa7.66□□□□□ -1.18
PTPRF-208ENST00000437607 PANO1I0J062 215 aa7.66□□□□□ -1.18
PTPRF-208ENST00000437607 MT1HL1P0DM35 61 aa7.66□□□□□ -1.18
PTPRF-208ENST00000437607 SPACA4Q8TDM5 124 aa7.66□□□□□ -1.18
PTPRF-208ENST00000437607 RAB37Q96AX2 223 aa7.66□□□□□ -1.18
PTPRF-208ENST00000437607 A0A0B4J2C4 111 aa7.65□□□□□ -1.18
PTPRF-208ENST00000437607 VPREB1P12018 145 aa7.65□□□□□ -1.18
PTPRF-208ENST00000437607 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.65□□□□□ -1.18
PTPRF-208ENST00000437607 TRAV13-2A0A0B4J235 113 aa7.64□□□□□ -1.19
PTPRF-208ENST00000437607 M0QXV9 152 aa7.64□□□□□ -1.19
PTPRF-208ENST00000437607 DPH3Q96FX2 82 aa7.64□□□□□ -1.19
PTPRF-208ENST00000437607 IGLV5-37A0A075B6J1 123 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 TRBV10-2A0A0K0K1G8 114 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 FAM168BA1KXE4 195 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 K7ERJ3 54 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 S100A7L2Q5SY68 101 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 Q8NDZ9 215 aa7.63□□□□□ -1.19
PTPRF-208ENST00000437607 M0R378 163 aa7.62□□□□□ -1.19
PTPRF-208ENST00000437607 CFC1BP0CG36 223 aa7.62□□□□□ -1.19
PTPRF-208ENST00000437607 CFC1P0CG37 223 aa7.62□□□□□ -1.19
PTPRF-208ENST00000437607 RPL13AP40429 203 aaKnown RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms