RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 SEC61GP60059 68 aa9.75□□□□□ -0.85
LIG1-202ENST00000427526 PRO0628Q9UI54 55 aa9.75□□□□□ -0.85
LIG1-202ENST00000427526 IGHV4-30-4P0DP06 118 aa9.75□□□□□ -0.85
LIG1-202ENST00000427526 LINC00167Q96N53 147 aa9.75□□□□□ -0.85
LIG1-202ENST00000427526 TMEM258P61165 79 aa9.74□□□□□ -0.85
LIG1-202ENST00000427526 REG3AQ06141 175 aa9.74□□□□□ -0.85
LIG1-202ENST00000427526 ANGP03950 147 aaKnown RBP9.74□□□□□ -0.85
LIG1-202ENST00000427526 C1orf43Q9BWL3 253 aa9.74□□□□□ -0.85
LIG1-202ENST00000427526 IGLV10-54A0A075B6I4 117 aa9.73□□□□□ -0.85
LIG1-202ENST00000427526 NCR3O14931 201 aa9.73□□□□□ -0.85
LIG1-202ENST00000427526 ORMDL1Q9P0S3 153 aa9.73□□□□□ -0.85
LIG1-202ENST00000427526 STAB1Q9NY15 2570 aa9.73□□□□□ -0.85
LIG1-202ENST00000427526 C9orf116Q5BN46 136 aaPredicted RBP9.72□□□□□ -0.85
LIG1-202ENST00000427526 KRTAP10-11P60412 298 aa9.71□□□□□ -0.85
LIG1-202ENST00000427526 DAD1P61803 113 aa9.71□□□□□ -0.85
LIG1-202ENST00000427526 Q8N814 137 aa9.71□□□□□ -0.85
LIG1-202ENST00000427526 LINC00846Q9NV44 126 aa9.71□□□□□ -0.85
LIG1-202ENST00000427526 CELA1Q9UNI1 258 aa9.71□□□□□ -0.85
LIG1-202ENST00000427526 Q8NAQ8 132 aa9.71□□□□□ -0.86
LIG1-202ENST00000427526 Q8NDZ9 215 aa9.71□□□□□ -0.86
LIG1-202ENST00000427526 LINC00336Q6ZUF6 198 aa9.69□□□□□ -0.86
LIG1-202ENST00000427526 PKIGQ9Y2B9 76 aa9.69□□□□□ -0.86
LIG1-202ENST00000427526 HIST1H4AP62805 103 aaKnown RBP9.69□□□□□ -0.86
LIG1-202ENST00000427526 BAHCC1Q9P281 2608 aa9.69□□□□□ -0.86
LIG1-202ENST00000427526 PKD1L1Q8TDX9 2849 aa9.68□□□□□ -0.86
LIG1-202ENST00000427526 MIFP14174 115 aa9.67□□□□□ -0.86
LIG1-202ENST00000427526 C10orf25Q5T742 122 aa9.67□□□□□ -0.86
LIG1-202ENST00000427526 Q6JHZ5 121 aa9.67□□□□□ -0.86
LIG1-202ENST00000427526 ATOX1O00244 68 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 CCKP06307 115 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 TMEM256-PLSCR3K7ERE1 68 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 LELP1Q5T871 98 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 C6orf223Q8N319 242 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 UNQ6190/PRO20217Q6UXQ8 127 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 PRR34Q9NV39 138 aa9.66□□□□□ -0.86
LIG1-202ENST00000427526 MAST4O15021 2626 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 JMJD7-PLA2G4BH0Y9G9 81 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 UPK3BQ9BT76 320 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 HTN3P15516 51 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 C6orf99Q4VX62 202 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 RETNQ9HD89 108 aa9.65□□□□□ -0.86
LIG1-202ENST00000427526 A0A0J9YWU9 116 aa9.64□□□□□ -0.87
LIG1-202ENST00000427526 SPART-AS1P0CW21 52 aa9.64□□□□□ -0.87
LIG1-202ENST00000427526 MUC7Q8TAX7 377 aa9.64□□□□□ -0.87
LIG1-202ENST00000427526 IGKV3D-7A0A0C4DH55 119 aa9.64□□□□□ -0.87
LIG1-202ENST00000427526 SPAG11BQ08648 103 aa9.64□□□□□ -0.87
LIG1-202ENST00000427526 LINC00575Q6W349 94 aa9.63□□□□□ -0.87
LIG1-202ENST00000427526 ENHOQ6UWT2 76 aa9.62□□□□□ -0.87
LIG1-202ENST00000427526 V9GYY9 64 aa9.62□□□□□ -0.87
LIG1-202ENST00000427526 S100A7L2Q5SY68 101 aa9.62□□□□□ -0.87
LIG1-202ENST00000427526 EGFEM1PQ0D2K5 195 aa9.61□□□□□ -0.87
LIG1-202ENST00000427526 KLK12Q9UKR0 248 aa9.61□□□□□ -0.87
LIG1-202ENST00000427526 COL6A5A8TX70 2615 aa9.61□□□□□ -0.87
LIG1-202ENST00000427526 IGLV6-57P01721 117 aa9.6□□□□□ -0.87
LIG1-202ENST00000427526 GVQW2A0A096LPI5 108 aaPredicted RBP9.59□□□□□ -0.87
LIG1-202ENST00000427526 RPL18AQ02543 176 aaKnown RBP9.59□□□□□ -0.87
LIG1-202ENST00000427526 SERP2Q8N6R1 65 aa9.59□□□□□ -0.87
LIG1-202ENST00000427526 FAM236DA0A1B0GTK5 79 aa9.58□□□□□ -0.88
LIG1-202ENST00000427526 FAM236CP0DP71 79 aa9.58□□□□□ -0.88
LIG1-202ENST00000427526 LYPD5Q6UWN5 251 aa9.58□□□□□ -0.88
LIG1-202ENST00000427526 A0A087WVE0 104 aa9.58□□□□□ -0.88
LIG1-202ENST00000427526 C6orf48Q9UBA6 75 aa9.56□□□□□ -0.88
LIG1-202ENST00000427526 CMYA5Q8N3K9 4069 aa9.56□□□□□ -0.88
LIG1-202ENST00000427526 ANK2Q01484 3957 aa9.56□□□□□ -0.88
LIG1-202ENST00000427526 NOTCH1P46531 2555 aa9.55□□□□□ -0.88
LIG1-202ENST00000427526 PRB2P02812 416 aaPredicted RBP9.54□□□□□ -0.88
LIG1-202ENST00000427526 ZNF561-AS1K7EIQ3 104 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 C1orf195Q5TG92 126 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 Q6ZQT0 140 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 ATP5EP2Q5VTU8 51 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 TENM3Q9P273 2699 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 LOC110117498A0A087WWA1 95 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 USP17L23D6RBM5 183 aa9.53□□□□□ -0.88
LIG1-202ENST00000427526 RBM3P98179 157 aaKnown RBP9.53□□□□□ -0.88
LIG1-202ENST00000427526 TRBV10-3A0A0K0K1G6 114 aa9.52□□□□□ -0.89
LIG1-202ENST00000427526 EPM2AB3EWF7 344 aa9.52□□□□□ -0.89
LIG1-202ENST00000427526 XAGE1AQ9HD64 81 aa9.52□□□□□ -0.89
LIG1-202ENST00000427526 KRTAP26-1Q6PEX3 210 aa9.51□□□□□ -0.89
LIG1-202ENST00000427526 Q6ZTC4 211 aa9.51□□□□□ -0.89
LIG1-202ENST00000427526 TRAV23DV6A0A075B6W5 121 aa9.5□□□□□ -0.89
LIG1-202ENST00000427526 H3BNG1 76 aa9.5□□□□□ -0.89
LIG1-202ENST00000427526 WFDC10BQ8IUB3 73 aa9.5□□□□□ -0.89
LIG1-202ENST00000427526 Q6ZQY7 126 aa9.5□□□□□ -0.89
LIG1-202ENST00000427526 UBL5Q9BZL1 73 aa9.5□□□□□ -0.89
LIG1-202ENST00000427526 LAMTOR3Q9UHA4 124 aa9.49□□□□□ -0.89
LIG1-202ENST00000427526 A0A0U1RQV1 116 aa9.49□□□□□ -0.89
LIG1-202ENST00000427526 NDUFC2-KCTD14E9PQ53 114 aa9.49□□□□□ -0.89
LIG1-202ENST00000427526 KPRPQ5T749 579 aaPredicted RBP9.48□□□□□ -0.89
LIG1-202ENST00000427526 DIRC1Q969H9 104 aa9.48□□□□□ -0.89
LIG1-202ENST00000427526 H3BQ85 93 aa9.48□□□□□ -0.89
LIG1-202ENST00000427526 M0R2N4 97 aa9.48□□□□□ -0.89
LIG1-202ENST00000427526 FAM19A1Q7Z5A9 133 aa9.48□□□□□ -0.89
LIG1-202ENST00000427526 ZNF73O43830 326 aaPredicted RBP9.47□□□□□ -0.89
LIG1-202ENST00000427526 HIGD2BQ4VC39 106 aa9.47□□□□□ -0.89
LIG1-202ENST00000427526 VPREB1P12018 145 aa9.47□□□□□ -0.89
LIG1-202ENST00000427526 NBEAL1Q6ZS30 2694 aa9.47□□□□□ -0.89
LIG1-202ENST00000427526 CAMK2N2Q96S95 79 aa9.46□□□□□ -0.89
LIG1-202ENST00000427526 SERP1Q9Y6X1 66 aa9.46□□□□□ -0.89
LIG1-202ENST00000427526 DNAH3Q8TD57 4116 aa9.45□□□□□ -0.9
LIG1-202ENST00000427526 ELOF1P60002 83 aaKnown RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms