RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 HIGD2AQ9BW72 106 aa6.67□□□□□ -1.34
USP4-204ENST00000416417 TRAPPC1Q9Y5R8 145 aa6.67□□□□□ -1.34
USP4-204ENST00000416417 HBDP02042 147 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 RPL24P83731 157 aaKnown RBP6.66□□□□□ -1.34
USP4-204ENST00000416417 CBLN2Q8IUK8 224 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 FAT4Q6V0I7 4981 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 IGLV7-46A0A075B6I9 117 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 A0A0U1RQV1 116 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 LINC00158P58513 81 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 CDIP1Q9H305 208 aa6.66□□□□□ -1.34
USP4-204ENST00000416417 C10orf91Q5T1B1 145 aa6.65□□□□□ -1.35
USP4-204ENST00000416417 COX17Q14061 63 aa6.64□□□□□ -1.35
USP4-204ENST00000416417 RHEBQ15382 184 aa6.64□□□□□ -1.35
USP4-204ENST00000416417 LCE2AQ5TA79 106 aaPredicted RBP6.64□□□□□ -1.35
USP4-204ENST00000416417 KRTAP9-2Q9BYQ4 174 aa6.64□□□□□ -1.35
USP4-204ENST00000416417 CHTOPQ9Y3Y2 248 aaKnown RBP6.64□□□□□ -1.35
USP4-204ENST00000416417 MUC17Q685J3 4493 aa6.63□□□□□ -1.35
USP4-204ENST00000416417 NCR3O14931 201 aa6.62□□□□□ -1.35
USP4-204ENST00000416417 SMIM13P0DJ93 91 aa6.62□□□□□ -1.35
USP4-204ENST00000416417 DAND5Q8N907 189 aa6.62□□□□□ -1.35
USP4-204ENST00000416417 SPRR4Q96PI1 79 aa6.62□□□□□ -1.35
USP4-204ENST00000416417 TMEM223A0PJW6 202 aa6.61□□□□□ -1.35
USP4-204ENST00000416417 CTAG1AP78358 180 aa6.61□□□□□ -1.35
USP4-204ENST00000416417 TPRXLQ17RH7 258 aa6.61□□□□□ -1.35
USP4-204ENST00000416417 SLC7A5P1Q8MH63 180 aa6.61□□□□□ -1.35
USP4-204ENST00000416417 PPDPFQ9H3Y8 114 aa6.61□□□□□ -1.35
USP4-204ENST00000416417 LOC105371267A0A1B0GV96 52 aa6.6□□□□□ -1.35
USP4-204ENST00000416417 BOD1L2Q8IYS8 172 aa6.6□□□□□ -1.35
USP4-204ENST00000416417 APOC3P02656 99 aa6.59□□□□□ -1.35
USP4-204ENST00000416417 MEIG1Q5JSS6 88 aa6.59□□□□□ -1.35
USP4-204ENST00000416417 MIR7-3HGQ8N6C7 128 aa6.58□□□□□ -1.36
USP4-204ENST00000416417 Q8NBF4 154 aa6.58□□□□□ -1.36
USP4-204ENST00000416417 SMCR5Q8TEV8 140 aa6.58□□□□□ -1.36
USP4-204ENST00000416417 IFI27L1Q96BM0 104 aa6.58□□□□□ -1.36
USP4-204ENST00000416417 SFTA2Q6UW10 78 aa6.57□□□□□ -1.36
USP4-204ENST00000416417 H0Y8G0 127 aa6.56□□□□□ -1.36
USP4-204ENST00000416417 PRYO14603 147 aa6.56□□□□□ -1.36
USP4-204ENST00000416417 FAM19A2Q8N3H0 131 aa6.56□□□□□ -1.36
USP4-204ENST00000416417 TRAV12-1A0A0B4J245 112 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 TRBV10-3A0A0K0K1G6 114 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 C4orf48Q5BLP8 95 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 ETDCA0A1B0GVM5 59 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 SPRR1AP35321 89 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 TSPEAR-AS2P59090 65 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 SPAG11AQ6PDA7 123 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 YPEL4Q96NS1 127 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 KCNQ1DNQ9H478 68 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 NDUFA12Q9UI09 145 aa6.55□□□□□ -1.36
USP4-204ENST00000416417 ZNF706Q9Y5V0 76 aaPredicted RBP6.55□□□□□ -1.36
USP4-204ENST00000416417 KRTAP4-16G5E9R7 235 aaPredicted RBP6.54□□□□□ -1.36
USP4-204ENST00000416417 ERC2-IT1O76042 136 aa6.54□□□□□ -1.36
USP4-204ENST00000416417 GAGE2AQ6NT46 116 aa6.54□□□□□ -1.36
USP4-204ENST00000416417 LINC00337Q8N6G1 96 aa6.54□□□□□ -1.36
USP4-204ENST00000416417 CHCHD1Q96BP2 118 aaKnown RBP6.54□□□□□ -1.36
USP4-204ENST00000416417 IGLV9-49A0A0B4J1Y8 123 aa6.53□□□□□ -1.36
USP4-204ENST00000416417 SNAPINO95295 136 aa6.52□□□□□ -1.37
USP4-204ENST00000416417 HERV-K104P63124 156 aa6.52□□□□□ -1.37
USP4-204ENST00000416417 KRTAP13-3Q3SY46 172 aa6.52□□□□□ -1.37
USP4-204ENST00000416417 KRTAP4-1Q9BYQ7 146 aa6.52□□□□□ -1.37
USP4-204ENST00000416417 B5MCH6 92 aa6.51□□□□□ -1.37
USP4-204ENST00000416417 MOBPQ13875 183 aa6.51□□□□□ -1.37
USP4-204ENST00000416417 FP248Q71RG6 208 aaPredicted RBP6.51□□□□□ -1.37
USP4-204ENST00000416417 SVBPQ8N300 66 aa6.51□□□□□ -1.37
USP4-204ENST00000416417 MYMXA0A1B0GTQ4 84 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 HSBP1O75506 76 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 PMCHL2Q9BQD1 86 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 DDTP30046 118 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 LINC00483Q53H64 154 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 Q9BRP9 147 aa6.5□□□□□ -1.37
USP4-204ENST00000416417 LEPROTO15243 131 aa6.49□□□□□ -1.37
USP4-204ENST00000416417 LINC00310P59036 64 aa6.49□□□□□ -1.37
USP4-204ENST00000416417 SPINK1P00995 79 aa6.48□□□□□ -1.37
USP4-204ENST00000416417 NPC2P61916 151 aa6.48□□□□□ -1.37
USP4-204ENST00000416417 MAP1LC3CQ9BXW4 147 aa6.48□□□□□ -1.37
USP4-204ENST00000416417 TMA7Q9Y2S6 64 aaKnown RBP6.48□□□□□ -1.37
USP4-204ENST00000416417 EIF4EBP3O60516 100 aaPredicted RBP6.47□□□□□ -1.37
USP4-204ENST00000416417 SERF1AO75920 110 aa6.47□□□□□ -1.37
USP4-204ENST00000416417 TRGC2P03986 189 aa6.47□□□□□ -1.37
USP4-204ENST00000416417 FABP4P15090 132 aa6.47□□□□□ -1.37
USP4-204ENST00000416417 KRTAP9-6A0A140TA67 174 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 LINC00587B1AMM8 73 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 J3QQQ9 107 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 LEPROTL1O95214 131 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 ASB16-AS1Q495Z4 193 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 Q8N377 158 aa6.46□□□□□ -1.37
USP4-204ENST00000416417 S100A12P80511 92 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 SOSTDC1Q6X4U4 206 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 LOC107984156A0A0G2JMH3 177 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 S100A7L2Q5SY68 101 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 Q6ZRX8 168 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 ARL17AQ8IVW1 177 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 ST20-AS1Q8NBB2 130 aa6.45□□□□□ -1.38
USP4-204ENST00000416417 TRBV10-2A0A0K0K1G8 114 aa6.44□□□□□ -1.38
USP4-204ENST00000416417 LGALS3P17931 250 aaKnown RBP6.44□□□□□ -1.38
USP4-204ENST00000416417 C9orf153Q5TBE3 101 aa6.44□□□□□ -1.38
USP4-204ENST00000416417 SSBP3-AS1Q7Z2R9 100 aa6.44□□□□□ -1.38
USP4-204ENST00000416417 SPANXB1Q9NS25 103 aaPredicted RBP6.44□□□□□ -1.38
USP4-204ENST00000416417 DPM2O94777 84 aa6.43□□□□□ -1.38
USP4-204ENST00000416417 IGLV6-57P01721 117 aa6.43□□□□□ -1.38
USP4-204ENST00000416417 PLNP26678 52 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms