RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 WFDC10BQ8IUB3 73 aa14.49□□□□□ -0.09
TRIM54-202ENST00000380075 INAFM2P0DMQ5 153 aa14.48□□□□□ -0.09
TRIM54-202ENST00000380075 Q9HAA7 133 aa14.48□□□□□ -0.09
TRIM54-202ENST00000380075 SNCGO76070 127 aa14.47□□□□□ -0.09
TRIM54-202ENST00000380075 C6orf223Q8N319 242 aa14.47□□□□□ -0.09
TRIM54-202ENST00000380075 C11orf45Q8TAV5 145 aa14.47□□□□□ -0.09
TRIM54-202ENST00000380075 C22orf24Q9Y442 160 aa14.47□□□□□ -0.09
TRIM54-202ENST00000380075 C10orf25Q5T742 122 aa14.46□□□□□ -0.09
TRIM54-202ENST00000380075 DEFB131BA0A096LNP1 70 aa14.45□□□□□ -0.1
TRIM54-202ENST00000380075 NANOS2P60321 138 aaKnown RBP14.45□□□□□ -0.1
TRIM54-202ENST00000380075 LECT2O14960 151 aa14.44□□□□□ -0.1
TRIM54-202ENST00000380075 ESRGQ1W209 222 aa14.43□□□□□ -0.1
TRIM54-202ENST00000380075 LINC01556Q5JQF7 62 aa14.42□□□□□ -0.1
TRIM54-202ENST00000380075 C15orf53Q8NAA6 179 aa14.42□□□□□ -0.1
TRIM54-202ENST00000380075 PRR3P79522 188 aaKnown RBP14.42□□□□□ -0.1
TRIM54-202ENST00000380075 KRTAP26-1Q6PEX3 210 aa14.41□□□□□ -0.1
TRIM54-202ENST00000380075 Q6Q795 121 aa14.41□□□□□ -0.1
TRIM54-202ENST00000380075 LINC00167Q96N53 147 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 DNAH7Q8WXX0 4024 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 ZNF561-AS1K7EIQ3 104 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 S100A7L2Q5SY68 101 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 LINC00526Q96FQ7 95 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 ORMDL1Q9P0S3 153 aa14.4□□□□□ -0.1
TRIM54-202ENST00000380075 A0A1B0GV72 72 aa14.39□□□□□ -0.11
TRIM54-202ENST00000380075 C6orf48Q9UBA6 75 aa14.39□□□□□ -0.11
TRIM54-202ENST00000380075 NCR3O14931 201 aa14.38□□□□□ -0.11
TRIM54-202ENST00000380075 GAGE2BQ13066 116 aa14.38□□□□□ -0.11
TRIM54-202ENST00000380075 GAGE2EQ4V326 116 aa14.38□□□□□ -0.11
TRIM54-202ENST00000380075 GAGE2DQ9UEU5 116 aa14.38□□□□□ -0.11
TRIM54-202ENST00000380075 F8WDY8 70 aa14.37□□□□□ -0.11
TRIM54-202ENST00000380075 Q8NDZ9 215 aa14.37□□□□□ -0.11
TRIM54-202ENST00000380075 OBSCN-AS1Q96MR7 158 aa14.37□□□□□ -0.11
TRIM54-202ENST00000380075 C2orf48Q96LS8 159 aa14.36□□□□□ -0.11
TRIM54-202ENST00000380075 C1orf43Q9BWL3 253 aa14.36□□□□□ -0.11
TRIM54-202ENST00000380075 Q8N814 137 aa14.36□□□□□ -0.11
TRIM54-202ENST00000380075 CAMK2N2Q96S95 79 aa14.35□□□□□ -0.11
TRIM54-202ENST00000380075 TRAV10A0A0B4J240 114 aa14.34□□□□□ -0.11
TRIM54-202ENST00000380075 WWC2-AS2Q96NR7 200 aa14.34□□□□□ -0.11
TRIM54-202ENST00000380075 IGLV6-57P01721 117 aa14.34□□□□□ -0.11
TRIM54-202ENST00000380075 C6orf99Q4VX62 202 aa14.33□□□□□ -0.12
TRIM54-202ENST00000380075 DNAH10OSP0CZ25 163 aa14.33□□□□□ -0.12
TRIM54-202ENST00000380075 C15orf56Q8N910 161 aa14.32□□□□□ -0.12
TRIM54-202ENST00000380075 HIGD2BQ4VC39 106 aa14.31□□□□□ -0.12
TRIM54-202ENST00000380075 TTC32Q5I0X7 151 aa14.31□□□□□ -0.12
TRIM54-202ENST00000380075 SDIM1Q6ZPB5 146 aa14.31□□□□□ -0.12
TRIM54-202ENST00000380075 TMEM256-PLSCR3K7ERE1 68 aa14.3□□□□□ -0.12
TRIM54-202ENST00000380075 SLPIP03973 132 aa14.29□□□□□ -0.12
TRIM54-202ENST00000380075 RPL18AQ02543 176 aaKnown RBP14.29□□□□□ -0.12
TRIM54-202ENST00000380075 LINC00643Q86TS7 51 aa14.29□□□□□ -0.12
TRIM54-202ENST00000380075 CSMD3Q7Z407 3707 aa14.29□□□□□ -0.12
TRIM54-202ENST00000380075 TRBV7-7A0A0K0K1E9 115 aa14.29□□□□□ -0.12
TRIM54-202ENST00000380075 GAGE2AQ6NT46 116 aa14.28□□□□□ -0.12
TRIM54-202ENST00000380075 LINC00575Q6W349 94 aa14.28□□□□□ -0.12
TRIM54-202ENST00000380075 IGKV2D-24A0A075B6R9 120 aa14.27□□□□□ -0.13
TRIM54-202ENST00000380075 JMJD7-PLA2G4BH0Y9G9 81 aa14.27□□□□□ -0.13
TRIM54-202ENST00000380075 Q6ZRU5 148 aa14.27□□□□□ -0.13
TRIM54-202ENST00000380075 IMUPQ9GZP8 106 aa14.27□□□□□ -0.13
TRIM54-202ENST00000380075 NDUFC2-KCTD14E9PQ53 114 aa14.25□□□□□ -0.13
TRIM54-202ENST00000380075 XAGE1AQ9HD64 81 aa14.25□□□□□ -0.13
TRIM54-202ENST00000380075 C14orf132Q9NPU4 83 aa14.25□□□□□ -0.13
TRIM54-202ENST00000380075 C9orf129Q5T035 196 aaKnown RBP14.25□□□□□ -0.13
TRIM54-202ENST00000380075 H3BQ85 93 aa14.23□□□□□ -0.13
TRIM54-202ENST00000380075 STARD9Q9P2P6 4700 aa14.23□□□□□ -0.13
TRIM54-202ENST00000380075 TRAV23DV6A0A075B6W5 121 aa14.23□□□□□ -0.13
TRIM54-202ENST00000380075 hADV29S1A0JD25 119 aa14.23□□□□□ -0.13
TRIM54-202ENST00000380075 TRBV10-3A0A0K0K1G6 114 aa14.22□□□□□ -0.13
TRIM54-202ENST00000380075 VPREB1P12018 145 aa14.22□□□□□ -0.13
TRIM54-202ENST00000380075 SMCR5Q8TEV8 140 aa14.22□□□□□ -0.13
TRIM54-202ENST00000380075 DIRC1Q969H9 104 aa14.22□□□□□ -0.13
TRIM54-202ENST00000380075 ANAPC13Q9BS18 74 aa14.22□□□□□ -0.13
TRIM54-202ENST00000380075 TRBV7-6A0A0J9YX20 115 aa14.2□□□□□ -0.14
TRIM54-202ENST00000380075 NDUFV3P56181 108 aaKnown RBP14.2□□□□□ -0.14
TRIM54-202ENST00000380075 M0R378 163 aa14.2□□□□□ -0.14
TRIM54-202ENST00000380075 SYCNQ0VAF6 134 aa14.2□□□□□ -0.14
TRIM54-202ENST00000380075 LINC00588Q9Y4M8 146 aa14.2□□□□□ -0.14
TRIM54-202ENST00000380075 DYNC2H1Q8NCM8 4307 aaKnown RBP14.19□□□□□ -0.14
TRIM54-202ENST00000380075 CCKP06307 115 aa14.17□□□□□ -0.14
TRIM54-202ENST00000380075 ZNF73O43830 326 aaPredicted RBP14.16□□□□□ -0.14
TRIM54-202ENST00000380075 RMI2Q96E14 147 aa14.16□□□□□ -0.14
TRIM54-202ENST00000380075 C3orf84H3BNL1 204 aa14.16□□□□□ -0.14
TRIM54-202ENST00000380075 CASC10Q5T4H9 136 aa14.16□□□□□ -0.14
TRIM54-202ENST00000380075 UPK3BQ9BT76 320 aa14.15□□□□□ -0.14
TRIM54-202ENST00000380075 GHRHP01286 108 aa14.14□□□□□ -0.15
TRIM54-202ENST00000380075 NUPR2A6NF83 97 aa14.14□□□□□ -0.15
TRIM54-202ENST00000380075 PLECQ15149 4684 aaKnown RBP14.13□□□□□ -0.15
TRIM54-202ENST00000380075 COX7BP24311 80 aa14.13□□□□□ -0.15
TRIM54-202ENST00000380075 Q6ZRP5 223 aa14.13□□□□□ -0.15
TRIM54-202ENST00000380075 TLX1NBP0CAT3 122 aa14.13□□□□□ -0.15
TRIM54-202ENST00000380075 ELOF1P60002 83 aaKnown RBP14.13□□□□□ -0.15
TRIM54-202ENST00000380075 TENM2Q9NT68 2774 aa14.11□□□□□ -0.15
TRIM54-202ENST00000380075 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.11□□□□□ -0.15
TRIM54-202ENST00000380075 LINC00846Q9NV44 126 aa14.1□□□□□ -0.15
TRIM54-202ENST00000380075 Q6ZQY7 126 aa14.09□□□□□ -0.15
TRIM54-202ENST00000380075 Q6JHZ5 121 aa14.08□□□□□ -0.16
TRIM54-202ENST00000380075 RBM3P98179 157 aaKnown RBP14.07□□□□□ -0.16
TRIM54-202ENST00000380075 PLA2G2DQ9UNK4 145 aa14.07□□□□□ -0.16
TRIM54-202ENST00000380075 LYSTQ99698 3801 aa14.07□□□□□ -0.16
TRIM54-202ENST00000380075 USP17L23D6RBM5 183 aa14.06□□□□□ -0.16
TRIM54-202ENST00000380075 LOC110117498A0A087WWA1 95 aa14.05□□□□□ -0.16
TRIM54-202ENST00000380075 LAMTOR3Q9UHA4 124 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms