RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.36□□□□□ -1.87
PCDH9-201ENST00000377861 FAM104AQ969W3 186 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 C19orf73Q9NVV2 129 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 C22orf24Q9Y442 160 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 SOSTDC1Q6X4U4 206 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 IGKV4-1P06312 121 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 Q6ZTC4 211 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 ACANP16112 2415 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 PRR15Q8IV56 129 aa3.35□□□□□ -1.87
PCDH9-201ENST00000377861 Q9BRP9 147 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 TRAV22A0A0B4J277 110 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 CHD7Q9P2D1 2997 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 SLPIP03973 132 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 CEP350Q5VT06 3117 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 A6NED7 52 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 X6R8D5 127 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 SMCR5Q8TEV8 140 aa3.34□□□□□ -1.87
PCDH9-201ENST00000377861 A0A096LPF7 62 aa3.34□□□□□ -1.88
PCDH9-201ENST00000377861 LINC00588Q9Y4M8 146 aa3.34□□□□□ -1.88
PCDH9-201ENST00000377861 CENPFP49454 3210 aa3.34□□□□□ -1.88
PCDH9-201ENST00000377861 UNC79Q9P2D8 2635 aa3.34□□□□□ -1.88
PCDH9-201ENST00000377861 SELENOKQ9Y6D0 94 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 PLXNB1O43157 2135 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 A0A096LNT2 108 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 PRM2P04554 102 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 YLPM1P49750 1951 aaKnown RBP3.33□□□□□ -1.88
PCDH9-201ENST00000377861 OCR1Q9BZK8 76 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 PCDH15Q96QU1 1955 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 FAM19A1Q7Z5A9 133 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 M0R2N4 97 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 SRCAPQ6ZRS2 3230 aa3.33□□□□□ -1.88
PCDH9-201ENST00000377861 F8P00451 2351 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 UQCR11O14957 56 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 SPRR1BP22528 89 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 Q8NAQ8 132 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 IGLV7-46A0A075B6I9 117 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 RETNLBQ9BQ08 111 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 GIG44P09565 113 aaPredicted RBP3.32□□□□□ -1.88
PCDH9-201ENST00000377861 A0A1W2PPR1 153 aa3.32□□□□□ -1.88
PCDH9-201ENST00000377861 WFDC11Q8NEX6 87 aa3.31□□□□□ -1.88
PCDH9-201ENST00000377861 SPRR1AP35321 89 aa3.31□□□□□ -1.88
PCDH9-201ENST00000377861 DEFB1P60022 68 aa3.31□□□□□ -1.88
PCDH9-201ENST00000377861 ATG2AQ2TAZ0 1938 aa3.31□□□□□ -1.88
PCDH9-201ENST00000377861 C15orf56Q8N910 161 aa3.31□□□□□ -1.88
PCDH9-201ENST00000377861 ITPR3Q14573 2671 aa3.3□□□□□ -1.88
PCDH9-201ENST00000377861 FAM218AQ96MZ4 157 aa3.3□□□□□ -1.88
PCDH9-201ENST00000377861 Q6ZRU5 148 aa3.3□□□□□ -1.88
PCDH9-201ENST00000377861 C6orf48Q9UBA6 75 aa3.3□□□□□ -1.88
PCDH9-201ENST00000377861 H0Y9P7 68 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 EPM2AB3EWF7 344 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 ARHGAP21Q5T5U3 1957 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 CDSNQ15517 529 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 DSPP15924 2871 aaKnown RBP3.29□□□□□ -1.88
PCDH9-201ENST00000377861 SNURFQ9Y675 71 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 C9orf163Q8N9P6 203 aa3.29□□□□□ -1.88
PCDH9-201ENST00000377861 NBEAQ8NFP9 2946 aa3.28□□□□□ -1.88
PCDH9-201ENST00000377861 C9orf116Q5BN46 136 aaPredicted RBP3.28□□□□□ -1.88
PCDH9-201ENST00000377861 DEFB104AQ8WTQ1 72 aa3.28□□□□□ -1.88
PCDH9-201ENST00000377861 LCE6AA0A183 80 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 PHF5AQ7RTV0 110 aaKnown RBP3.27□□□□□ -1.89
PCDH9-201ENST00000377861 PRR3P79522 188 aaKnown RBP3.27□□□□□ -1.89
PCDH9-201ENST00000377861 CLPSL2Q6UWE3 100 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 FLNCQ14315 2725 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 SPINK1P00995 79 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 Q8N377 158 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 FASNP49327 2511 aaKnown RBP3.27□□□□□ -1.89
PCDH9-201ENST00000377861 TM2D3Q9BRN9 247 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 KMT2EQ8IZD2 1858 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 FAM229BQ4G0N7 80 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 MPLKIPQ8TAP9 179 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 CDC42SE1Q9NRR8 79 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 Q5XG85 94 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 WFDC10BQ8IUB3 73 aa3.27□□□□□ -1.89
PCDH9-201ENST00000377861 A0A087WSZ3 146 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 CEP192Q8TEP8 1941 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 WFDC13Q8IUB5 93 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 DSCAMO60469 2012 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 CPAMD8Q8IZJ3 1885 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 CHD6Q8TD26 2715 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 IGHV6-1A0A0B4J1U7 121 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 NSD1Q96L73 2696 aaPredicted RBP3.26□□□□□ -1.89
PCDH9-201ENST00000377861 LINC00313P59037 77 aa3.26□□□□□ -1.89
PCDH9-201ENST00000377861 HELZ2Q9BYK8 2649 aaKnown RBP3.26□□□□□ -1.89
PCDH9-201ENST00000377861 HCFC1P51610 2035 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 A0A087WVE0 104 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 A0A1B0GU69 56 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 ZNF861PO60384 105 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 MAPK1IP1LQ8NDC0 245 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 LINC00476Q8WZB0 136 aa3.25□□□□□ -1.89
PCDH9-201ENST00000377861 TEP1Q99973 2627 aaKnown RBP3.25□□□□□ -1.89
PCDH9-201ENST00000377861 COX6B2Q6YFQ2 88 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 MRPL34Q9BQ48 92 aaKnown RBP3.24□□□□□ -1.89
PCDH9-201ENST00000377861 C10orf99Q6UWK7 81 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 C3orf84H3BNL1 204 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 EXPH5Q8NEV8 1989 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 ANKRD17O75179 2603 aaKnown RBP3.24□□□□□ -1.89
PCDH9-201ENST00000377861 HRCT1Q6UXD1 115 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 STAB1Q9NY15 2570 aa3.24□□□□□ -1.89
PCDH9-201ENST00000377861 NANOS2P60321 138 aaKnown RBP3.23□□□□□ -1.89
PCDH9-201ENST00000377861 MUC4Q99102 2169 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms