RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 TMEM223A0PJW6 202 aa12.36□□□□□ -0.43
VSX1-201ENST00000376707 RPL24P83731 157 aaKnown RBP12.36□□□□□ -0.43
VSX1-201ENST00000376707 CBLN2Q8IUK8 224 aa12.36□□□□□ -0.43
VSX1-201ENST00000376707 HSBP1O75506 76 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 PRLHP81277 87 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 FAM229BQ4G0N7 80 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 KRTAP13-2Q52LG2 175 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 FAM19A1Q7Z5A9 133 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 Q8NDZ9 215 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 TMEM126AQ9H061 195 aa12.32□□□□□ -0.44
VSX1-201ENST00000376707 TMEM238C9JI98 176 aa12.31□□□□□ -0.44
VSX1-201ENST00000376707 FAM19A2Q8N3H0 131 aa12.31□□□□□ -0.44
VSX1-201ENST00000376707 TRGC2P03986 189 aa12.3□□□□□ -0.44
VSX1-201ENST00000376707 LINC00158P58513 81 aa12.3□□□□□ -0.44
VSX1-201ENST00000376707 IGKV2D-26A0A0A0MRZ7 120 aa12.29□□□□□ -0.44
VSX1-201ENST00000376707 M0R378 163 aa12.28□□□□□ -0.44
VSX1-201ENST00000376707 LINC00304Q8N9R0 145 aa12.28□□□□□ -0.44
VSX1-201ENST00000376707 LINC00310P59036 64 aa12.26□□□□□ -0.45
VSX1-201ENST00000376707 HERV-K104P63124 156 aa12.25□□□□□ -0.45
VSX1-201ENST00000376707 MUC2Q02817 5179 aa12.25□□□□□ -0.45
VSX1-201ENST00000376707 A0A0U1RRA0 63 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 SERF1AO75920 110 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 LEPROTL1O95214 131 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 SMIM13P0DJ93 91 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 RETNLBQ9BQ08 111 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 PLEKHB2Q96CS7 222 aa12.22□□□□□ -0.45
VSX1-201ENST00000376707 NDUFA12Q9UI09 145 aa12.22□□□□□ -0.45
VSX1-201ENST00000376707 A0A0U1RQV1 116 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 LINC00587B1AMM8 73 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 MEIG1Q5JSS6 88 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 SLC7A5P1Q8MH63 180 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 HIGD2AQ9BW72 106 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 H0Y8G0 127 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 ATP6V1G1O75348 118 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 MIR7-3HGQ8N6C7 128 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 MYMXA0A1B0GTQ4 84 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 COLCA2A8K830 154 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 PLNP26678 52 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 BOD1L2Q8IYS8 172 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 HSPB8Q9UJY1 196 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 TSPEAR-AS2P59090 65 aa12.17□□□□□ -0.46
VSX1-201ENST00000376707 LEPROTO15243 131 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 CTAG1AP78358 180 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 C3orf22Q8N5N4 141 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 MAP1LC3CQ9BXW4 147 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 PRYO14603 147 aa12.15□□□□□ -0.46
VSX1-201ENST00000376707 LOC107984156A0A0G2JMH3 177 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 DPM2O94777 84 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 SPRR1AP35321 89 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 ARL17AQ8IVW1 177 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 KCNQ1DNQ9H478 68 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 IGLV7-46A0A075B6I9 117 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 FABP4P15090 132 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 LINC00337Q8N6G1 96 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 SPRR4Q96PI1 79 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 CDIP1Q9H305 208 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 ZNF706Q9Y5V0 76 aaPredicted RBP12.13□□□□□ -0.47
VSX1-201ENST00000376707 J3QQQ9 107 aa12.12□□□□□ -0.47
VSX1-201ENST00000376707 NCR3O14931 201 aa12.12□□□□□ -0.47
VSX1-201ENST00000376707 KRTAP4-16G5E9R7 235 aaPredicted RBP12.11□□□□□ -0.47
VSX1-201ENST00000376707 NMUP48645 174 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 HERVK_113P61574 105 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 TPRXLQ17RH7 258 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 IGKCP01834 107 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 SPAG11AQ6PDA7 123 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 PMCHL2Q9BQD1 86 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 TRBV10-3A0A0K0K1G6 114 aa12.09□□□□□ -0.47
VSX1-201ENST00000376707 DAND5Q8N907 189 aa12.08□□□□□ -0.48
VSX1-201ENST00000376707 TRBV10-2A0A0K0K1G8 114 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 ETDCA0A1B0GVM5 59 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 C4orf48Q5BLP8 95 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 LGALS3P17931 250 aaKnown RBP12.06□□□□□ -0.48
VSX1-201ENST00000376707 S100A12P80511 92 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 SMCR5Q8TEV8 140 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 PPDPFQ9H3Y8 114 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 SPANXB1Q9NS25 103 aaPredicted RBP12.03□□□□□ -0.48
VSX1-201ENST00000376707 E9PLD3 99 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BKO60814 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 NDUFC2O95298 119 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BJP06899 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BOP23527 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BBP33778 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BDP58876 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BCP62807 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST2H2BEQ16778 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.02□□□□□ -0.49
VSX1-201ENST00000376707 Q8NBF4 154 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BHQ93079 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BNQ99877 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BMQ99879 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 B5MCH6 92 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 DDTP30046 118 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 MIEN1Q9BRT3 115 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 SYS1-DBNDD2H3BUS1 97 aa12□□□□□ -0.49
VSX1-201ENST00000376707 A0A0J9YXY3 114 aa11.99□□□□□ -0.49
VSX1-201ENST00000376707 LINC00483Q53H64 154 aa11.99□□□□□ -0.49
VSX1-201ENST00000376707 FP248Q71RG6 208 aaPredicted RBP11.99□□□□□ -0.49
VSX1-201ENST00000376707 IGLV6-57P01721 117 aa11.98□□□□□ -0.49
VSX1-201ENST00000376707 ADAMTSL4-AS1Q5T5F5 129 aa11.97□□□□□ -0.49
VSX1-201ENST00000376707 SOSTDC1Q6X4U4 206 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms