RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TMEM238C9JI98 176 aa12.79□□□□□ -0.36
CCDC28B-201ENST00000373602 TYMSOSQ8TAI1 123 aa12.78□□□□□ -0.36
CCDC28B-201ENST00000373602 ANAPC11Q9NYG5 84 aa12.78□□□□□ -0.36
CCDC28B-201ENST00000373602 M0R378 163 aa12.77□□□□□ -0.37
CCDC28B-201ENST00000373602 TRGC2P03986 189 aa12.77□□□□□ -0.37
CCDC28B-201ENST00000373602 PRLHP81277 87 aa12.77□□□□□ -0.37
CCDC28B-201ENST00000373602 FAM19A1Q7Z5A9 133 aa12.77□□□□□ -0.37
CCDC28B-201ENST00000373602 RNF213Q63HN8 5207 aa12.76□□□□□ -0.37
CCDC28B-201ENST00000373602 A0A0U1RRA0 63 aa12.75□□□□□ -0.37
CCDC28B-201ENST00000373602 PRR4Q16378 134 aa12.75□□□□□ -0.37
CCDC28B-201ENST00000373602 FAM229BQ4G0N7 80 aa12.75□□□□□ -0.37
CCDC28B-201ENST00000373602 TSPAN13O95857 204 aa12.74□□□□□ -0.37
CCDC28B-201ENST00000373602 KRTAP13-2Q52LG2 175 aa12.74□□□□□ -0.37
CCDC28B-201ENST00000373602 SMIM13P0DJ93 91 aa12.73□□□□□ -0.37
CCDC28B-201ENST00000373602 LINC00310P59036 64 aa12.73□□□□□ -0.37
CCDC28B-201ENST00000373602 HERV-K104P63124 156 aa12.72□□□□□ -0.37
CCDC28B-201ENST00000373602 SERF1AO75920 110 aa12.71□□□□□ -0.37
CCDC28B-201ENST00000373602 LEPROTL1O95214 131 aa12.71□□□□□ -0.37
CCDC28B-201ENST00000373602 MEIG1Q5JSS6 88 aa12.71□□□□□ -0.37
CCDC28B-201ENST00000373602 ATP6V1G1O75348 118 aa12.7□□□□□ -0.38
CCDC28B-201ENST00000373602 NDUFA12Q9UI09 145 aa12.7□□□□□ -0.38
CCDC28B-201ENST00000373602 H0Y8G0 127 aa12.69□□□□□ -0.38
CCDC28B-201ENST00000373602 MIR7-3HGQ8N6C7 128 aa12.69□□□□□ -0.38
CCDC28B-201ENST00000373602 LINC00587B1AMM8 73 aa12.68□□□□□ -0.38
CCDC28B-201ENST00000373602 BOD1L2Q8IYS8 172 aa12.68□□□□□ -0.38
CCDC28B-201ENST00000373602 PLEKHB2Q96CS7 222 aa12.68□□□□□ -0.38
CCDC28B-201ENST00000373602 MYMXA0A1B0GTQ4 84 aa12.67□□□□□ -0.38
CCDC28B-201ENST00000373602 SLC7A5P1Q8MH63 180 aa12.67□□□□□ -0.38
CCDC28B-201ENST00000373602 IGKV2D-26A0A0A0MRZ7 120 aa12.66□□□□□ -0.38
CCDC28B-201ENST00000373602 COLCA2A8K830 154 aa12.65□□□□□ -0.38
CCDC28B-201ENST00000373602 HIGD2AQ9BW72 106 aa12.65□□□□□ -0.38
CCDC28B-201ENST00000373602 HSPB8Q9UJY1 196 aa12.65□□□□□ -0.38
CCDC28B-201ENST00000373602 LEPROTO15243 131 aa12.64□□□□□ -0.39
CCDC28B-201ENST00000373602 PLNP26678 52 aa12.64□□□□□ -0.39
CCDC28B-201ENST00000373602 TSPEAR-AS2P59090 65 aa12.64□□□□□ -0.39
CCDC28B-201ENST00000373602 LINC00304Q8N9R0 145 aa12.64□□□□□ -0.39
CCDC28B-201ENST00000373602 MAP1LC3CQ9BXW4 147 aa12.64□□□□□ -0.39
CCDC28B-201ENST00000373602 PRYO14603 147 aa12.63□□□□□ -0.39
CCDC28B-201ENST00000373602 NCR3O14931 201 aa12.62□□□□□ -0.39
CCDC28B-201ENST00000373602 FABP4P15090 132 aa12.62□□□□□ -0.39
CCDC28B-201ENST00000373602 SPRR1AP35321 89 aa12.61□□□□□ -0.39
CCDC28B-201ENST00000373602 KCNQ1DNQ9H478 68 aa12.61□□□□□ -0.39
CCDC28B-201ENST00000373602 DPM2O94777 84 aa12.6□□□□□ -0.39
CCDC28B-201ENST00000373602 LOC107984156A0A0G2JMH3 177 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 J3QQQ9 107 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 ARL17AQ8IVW1 177 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 LINC00337Q8N6G1 96 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 SPRR4Q96PI1 79 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 PMCHL2Q9BQD1 86 aa12.59□□□□□ -0.39
CCDC28B-201ENST00000373602 IGKCP01834 107 aa12.58□□□□□ -0.4
CCDC28B-201ENST00000373602 HERVK_113P61574 105 aa12.58□□□□□ -0.4
CCDC28B-201ENST00000373602 C3orf22Q8N5N4 141 aa12.58□□□□□ -0.4
CCDC28B-201ENST00000373602 TRBV10-3A0A0K0K1G6 114 aa12.57□□□□□ -0.4
CCDC28B-201ENST00000373602 KRTAP4-16G5E9R7 235 aaPredicted RBP12.57□□□□□ -0.4
CCDC28B-201ENST00000373602 CTAG1AP78358 180 aa12.57□□□□□ -0.4
CCDC28B-201ENST00000373602 DAND5Q8N907 189 aa12.57□□□□□ -0.4
CCDC28B-201ENST00000373602 NMUP48645 174 aa12.56□□□□□ -0.4
CCDC28B-201ENST00000373602 ZNF706Q9Y5V0 76 aaPredicted RBP12.56□□□□□ -0.4
CCDC28B-201ENST00000373602 ETDCA0A1B0GVM5 59 aa12.54□□□□□ -0.4
CCDC28B-201ENST00000373602 LGALS3P17931 250 aaKnown RBP12.54□□□□□ -0.4
CCDC28B-201ENST00000373602 RETNLBQ9BQ08 111 aa12.54□□□□□ -0.4
CCDC28B-201ENST00000373602 TRBV10-2A0A0K0K1G8 114 aa12.53□□□□□ -0.4
CCDC28B-201ENST00000373602 SMCR5Q8TEV8 140 aa12.53□□□□□ -0.4
CCDC28B-201ENST00000373602 S100A12P80511 92 aa12.52□□□□□ -0.41
CCDC28B-201ENST00000373602 DDTP30046 118 aa12.49□□□□□ -0.41
CCDC28B-201ENST00000373602 SPAG11AQ6PDA7 123 aa12.49□□□□□ -0.41
CCDC28B-201ENST00000373602 MIEN1Q9BRT3 115 aa12.49□□□□□ -0.41
CCDC28B-201ENST00000373602 SPANXB1Q9NS25 103 aaPredicted RBP12.49□□□□□ -0.41
CCDC28B-201ENST00000373602 B5MCH6 92 aa12.48□□□□□ -0.41
CCDC28B-201ENST00000373602 E9PLD3 99 aa12.48□□□□□ -0.41
CCDC28B-201ENST00000373602 NDUFC2O95298 119 aa12.48□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BKO60814 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BJP06899 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BOP23527 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BBP33778 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BDP58876 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BCP62807 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST2H2BEQ16778 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BHQ93079 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BNQ99877 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 HIST1H2BMQ99879 126 aa12.47□□□□□ -0.41
CCDC28B-201ENST00000373602 A0A0J9YXY3 114 aa12.46□□□□□ -0.41
CCDC28B-201ENST00000373602 SYS1-DBNDD2H3BUS1 97 aa12.45□□□□□ -0.42
CCDC28B-201ENST00000373602 LINC00483Q53H64 154 aa12.45□□□□□ -0.42
CCDC28B-201ENST00000373602 PPDPFQ9H3Y8 114 aa12.45□□□□□ -0.42
CCDC28B-201ENST00000373602 IGLV6-57P01721 117 aa12.44□□□□□ -0.42
CCDC28B-201ENST00000373602 ADAMTSL4-AS1Q5T5F5 129 aa12.44□□□□□ -0.42
CCDC28B-201ENST00000373602 SOSTDC1Q6X4U4 206 aa12.44□□□□□ -0.42
CCDC28B-201ENST00000373602 IGLV7-46A0A075B6I9 117 aa12.43□□□□□ -0.42
CCDC28B-201ENST00000373602 EIF4EBP3O60516 100 aaPredicted RBP12.42□□□□□ -0.42
CCDC28B-201ENST00000373602 ERC2-IT1O76042 136 aa12.42□□□□□ -0.42
CCDC28B-201ENST00000373602 TPRXLQ17RH7 258 aa12.42□□□□□ -0.42
CCDC28B-201ENST00000373602 S100A7L2Q5SY68 101 aa12.42□□□□□ -0.42
CCDC28B-201ENST00000373602 Q6ZRX8 168 aa12.42□□□□□ -0.42
CCDC28B-201ENST00000373602 C4orf48Q5BLP8 95 aa12.41□□□□□ -0.42
CCDC28B-201ENST00000373602 GAGE2AQ6NT46 116 aa12.41□□□□□ -0.42
CCDC28B-201ENST00000373602 Q8NBF4 154 aa12.41□□□□□ -0.42
CCDC28B-201ENST00000373602 Q9BRP9 147 aa12.41□□□□□ -0.42
CCDC28B-201ENST00000373602 NPC2P61916 151 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms