RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SPATA3Q8NHX4 192 aa9.12□□□□□ -0.95
USP47-202ENST00000339865 PCNTO95613 3336 aa9.12□□□□□ -0.95
USP47-202ENST00000339865 LINC00313P59037 77 aa9.12□□□□□ -0.95
USP47-202ENST00000339865 SMCR5Q8TEV8 140 aa9.11□□□□□ -0.95
USP47-202ENST00000339865 TRAV22A0A0B4J277 110 aa9.11□□□□□ -0.95
USP47-202ENST00000339865 Q8NA96 180 aa9.11□□□□□ -0.95
USP47-202ENST00000339865 PSMG3-AS1Q96PY0 264 aa9.1□□□□□ -0.95
USP47-202ENST00000339865 TM2D3Q9BRN9 247 aa9.1□□□□□ -0.95
USP47-202ENST00000339865 LINC00310P59036 64 aa9.09□□□□□ -0.95
USP47-202ENST00000339865 TYMSOSQ8TAI1 123 aa9.09□□□□□ -0.95
USP47-202ENST00000339865 WISP2O76076 250 aa9.08□□□□□ -0.96
USP47-202ENST00000339865 URB1-AS1Q96HZ7 61 aa9.08□□□□□ -0.96
USP47-202ENST00000339865 LUZP6Q538Z0 58 aa9.08□□□□□ -0.96
USP47-202ENST00000339865 AMELXQ99217 191 aa9.08□□□□□ -0.96
USP47-202ENST00000339865 FBXL19-AS1Q494R0 122 aa9.08□□□□□ -0.96
USP47-202ENST00000339865 UQCR11O14957 56 aa9.07□□□□□ -0.96
USP47-202ENST00000339865 Q6ZRU5 148 aa9.07□□□□□ -0.96
USP47-202ENST00000339865 A8MUN3 132 aa9.06□□□□□ -0.96
USP47-202ENST00000339865 LINC01554Q52M75 96 aa9.06□□□□□ -0.96
USP47-202ENST00000339865 C22orf24Q9Y442 160 aa9.06□□□□□ -0.96
USP47-202ENST00000339865 CHTF8P0CG12 524 aa9.06□□□□□ -0.96
USP47-202ENST00000339865 CD164Q04900 197 aa9.06□□□□□ -0.96
USP47-202ENST00000339865 C9orf129Q5T035 196 aaKnown RBP9.05□□□□□ -0.96
USP47-202ENST00000339865 NHLRC4P0CG21 123 aaPredicted RBP9.05□□□□□ -0.96
USP47-202ENST00000339865 IGF2RP11717 2491 aa9.04□□□□□ -0.96
USP47-202ENST00000339865 RPL37AP61513 92 aaKnown RBP9.04□□□□□ -0.96
USP47-202ENST00000339865 Q8N2B8 174 aa9.04□□□□□ -0.96
USP47-202ENST00000339865 MIR22HGQ0VDD5 57 aa9.03□□□□□ -0.96
USP47-202ENST00000339865 FAM19A4Q96LR4 140 aa9.02□□□□□ -0.96
USP47-202ENST00000339865 A0A1B0GUV1 79 aa9.02□□□□□ -0.97
USP47-202ENST00000339865 CHD8Q9HCK8 2581 aa9.02□□□□□ -0.97
USP47-202ENST00000339865 H3BPC8 53 aa9.02□□□□□ -0.97
USP47-202ENST00000339865 F8WDY8 70 aa9.01□□□□□ -0.97
USP47-202ENST00000339865 Q6ZSN1 163 aa9.01□□□□□ -0.97
USP47-202ENST00000339865 USP9YO00507 2555 aaPredicted RBP9.01□□□□□ -0.97
USP47-202ENST00000339865 COA5Q86WW8 74 aa9.01□□□□□ -0.97
USP47-202ENST00000339865 COL4A3Q01955 1670 aa9.01□□□□□ -0.97
USP47-202ENST00000339865 CYP4F30PQ9H0H9 118 aa9.01□□□□□ -0.97
USP47-202ENST00000339865 FASNP49327 2511 aaKnown RBP9□□□□□ -0.97
USP47-202ENST00000339865 BCE1O60756 84 aa9□□□□□ -0.97
USP47-202ENST00000339865 LINC01561Q8N1V8 128 aa9□□□□□ -0.97
USP47-202ENST00000339865 Q96NJ1 140 aa8.99□□□□□ -0.97
USP47-202ENST00000339865 KTN1-AS1Q86SY8 53 aa8.99□□□□□ -0.97
USP47-202ENST00000339865 IGLV1-40P01703 118 aa8.98□□□□□ -0.97
USP47-202ENST00000339865 LYPD5Q6UWN5 251 aa8.97□□□□□ -0.97
USP47-202ENST00000339865 LINC00476Q8WZB0 136 aa8.97□□□□□ -0.97
USP47-202ENST00000339865 ODF3L2Q3SX64 289 aa8.97□□□□□ -0.97
USP47-202ENST00000339865 Q6ZQT0 140 aa8.96□□□□□ -0.97
USP47-202ENST00000339865 C11orf72Q8NBR9 251 aa8.95□□□□□ -0.98
USP47-202ENST00000339865 CRIP3Q6Q6R5 217 aa8.95□□□□□ -0.98
USP47-202ENST00000339865 EPM2AB3EWF7 344 aa8.95□□□□□ -0.98
USP47-202ENST00000339865 LCA10Q71F78 164 aa8.95□□□□□ -0.98
USP47-202ENST00000339865 A0A096LNJ9 63 aa8.95□□□□□ -0.98
USP47-202ENST00000339865 TRBV7-4A0A0J9YYF1 115 aa8.94□□□□□ -0.98
USP47-202ENST00000339865 SMCPP49901 116 aaPredicted RBP8.94□□□□□ -0.98
USP47-202ENST00000339865 FAM218AQ96MZ4 157 aa8.94□□□□□ -0.98
USP47-202ENST00000339865 LINC00167Q96N53 147 aa8.94□□□□□ -0.98
USP47-202ENST00000339865 A0A1W2PNU3 283 aaPredicted RBP8.93□□□□□ -0.98
USP47-202ENST00000339865 C9orf92A6NGG3 77 aa8.92□□□□□ -0.98
USP47-202ENST00000339865 SMR3BP02814 79 aaPredicted RBP8.92□□□□□ -0.98
USP47-202ENST00000339865 LINC00336Q6ZUF6 198 aa8.92□□□□□ -0.98
USP47-202ENST00000339865 LOC101927531A0A1B0GV80 90 aa8.92□□□□□ -0.98
USP47-202ENST00000339865 ERC2-IT1O76042 136 aa8.92□□□□□ -0.98
USP47-202ENST00000339865 C11orf71Q6IPW1 123 aa8.92□□□□□ -0.98
USP47-202ENST00000339865 IGLV6-57P01721 117 aa8.91□□□□□ -0.98
USP47-202ENST00000339865 Q8NBF4 154 aa8.91□□□□□ -0.98
USP47-202ENST00000339865 AKAP13Q12802 2813 aa8.9□□□□□ -0.99
USP47-202ENST00000339865 EPG5Q9HCE0 2579 aa8.89□□□□□ -0.99
USP47-202ENST00000339865 A0A1B0GW54 56 aa8.89□□□□□ -0.99
USP47-202ENST00000339865 LTBP2Q14767 1821 aa8.89□□□□□ -0.99
USP47-202ENST00000339865 ANKRD11Q6UB99 2663 aaPredicted RBP8.89□□□□□ -0.99
USP47-202ENST00000339865 A0A0D9SG42 100 aa8.88□□□□□ -0.99
USP47-202ENST00000339865 IGLV1-51P01701 117 aa8.88□□□□□ -0.99
USP47-202ENST00000339865 PHF5AQ7RTV0 110 aaKnown RBP8.87□□□□□ -0.99
USP47-202ENST00000339865 LOC110117498A0A087WWA1 95 aa8.87□□□□□ -0.99
USP47-202ENST00000339865 K7EQZ3 153 aa8.87□□□□□ -0.99
USP47-202ENST00000339865 CDC42SE1Q9NRR8 79 aa8.87□□□□□ -0.99
USP47-202ENST00000339865 ELOF1P60002 83 aaKnown RBP8.87□□□□□ -0.99
USP47-202ENST00000339865 KRTAP10-9P60411 292 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 A8MWP4 228 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 ST20-AS1Q8NBB2 130 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 CSNK1G2-AS1Q8NCQ2 148 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 WWC2-AS2Q96NR7 200 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 RTL8CO15255 209 aa8.84□□□□□ -0.99
USP47-202ENST00000339865 COL4A4P53420 1690 aaPredicted RBP8.83□□□□□ -1
USP47-202ENST00000339865 Q6ZRX8 168 aa8.83□□□□□ -1
USP47-202ENST00000339865 IGHV3OR16-9A0A0B4J2B5 98 aa8.83□□□□□ -1
USP47-202ENST00000339865 PRO0461Q9UI25 63 aa8.83□□□□□ -1
USP47-202ENST00000339865 WIPF1O43516 503 aa8.82□□□□□ -1
USP47-202ENST00000339865 IGLV5-39A0A0G2JS06 123 aa8.82□□□□□ -1
USP47-202ENST00000339865 FHL3Q13643 280 aa8.82□□□□□ -1
USP47-202ENST00000339865 MRPL34Q9BQ48 92 aaKnown RBP8.82□□□□□ -1
USP47-202ENST00000339865 CEP350Q5VT06 3117 aa8.81□□□□□ -1
USP47-202ENST00000339865 IGLV5-37A0A075B6J1 123 aa8.8□□□□□ -1
USP47-202ENST00000339865 H3BS24 57 aa8.8□□□□□ -1
USP47-202ENST00000339865 RBM12B-AS1Q9P1G2 102 aa8.8□□□□□ -1
USP47-202ENST00000339865 KIF25-AS1Q9Y6Z4 181 aa8.8□□□□□ -1
USP47-202ENST00000339865 AVPP01185 164 aa8.79□□□□□ -1
USP47-202ENST00000339865 ZNF575Q86XF7 245 aa8.78□□□□□ -1
USP47-202ENST00000339865 COX8CQ7Z4L0 72 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms