RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 SPATA3Q8NHX4 192 aa9.31□□□□□ -0.92
RFFL-201ENST00000315249 Q6JHZ5 121 aa9.31□□□□□ -0.92
RFFL-201ENST00000315249 Q8N9L7 120 aa9.31□□□□□ -0.92
RFFL-201ENST00000315249 PHF5AQ7RTV0 110 aaKnown RBP9.31□□□□□ -0.92
RFFL-201ENST00000315249 Q9UF83 564 aa9.31□□□□□ -0.92
RFFL-201ENST00000315249 LINC01561Q8N1V8 128 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 ATRQ13535 2644 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 MT-ATP8P03928 68 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 SNURFQ9Y675 71 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 CENPEQ02224 2701 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 KIF25-AS1Q9Y6Z4 181 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 FAM19A4Q96LR4 140 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 MPLKIPQ8TAP9 179 aa9.3□□□□□ -0.92
RFFL-201ENST00000315249 MOBPQ13875 183 aa9.29□□□□□ -0.92
RFFL-201ENST00000315249 SERP1Q9Y6X1 66 aa9.29□□□□□ -0.92
RFFL-201ENST00000315249 K7ERS5 55 aa9.28□□□□□ -0.92
RFFL-201ENST00000315249 NDUFC2O95298 119 aa9.28□□□□□ -0.92
RFFL-201ENST00000315249 LINC00167Q96N53 147 aa9.27□□□□□ -0.92
RFFL-201ENST00000315249 C6orf48Q9UBA6 75 aa9.27□□□□□ -0.93
RFFL-201ENST00000315249 KRTAP10-3P60369 221 aa9.27□□□□□ -0.93
RFFL-201ENST00000315249 LINC01547P58512 204 aaPredicted RBP9.27□□□□□ -0.93
RFFL-201ENST00000315249 LINC00575Q6W349 94 aa9.27□□□□□ -0.93
RFFL-201ENST00000315249 CDH23Q9H251 3354 aa9.25□□□□□ -0.93
RFFL-201ENST00000315249 IGHV3OR16-9A0A0B4J2B5 98 aa9.25□□□□□ -0.93
RFFL-201ENST00000315249 LINC00310P59036 64 aa9.25□□□□□ -0.93
RFFL-201ENST00000315249 MGAQ8IWI9 3026 aa9.25□□□□□ -0.93
RFFL-201ENST00000315249 TYMSOSQ8TAI1 123 aa9.25□□□□□ -0.93
RFFL-201ENST00000315249 Q6Q795 121 aa9.24□□□□□ -0.93
RFFL-201ENST00000315249 A0A096LNT2 108 aa9.24□□□□□ -0.93
RFFL-201ENST00000315249 PLA2G1BP04054 148 aaKnown RBP9.24□□□□□ -0.93
RFFL-201ENST00000315249 A0A096LNJ9 63 aa9.23□□□□□ -0.93
RFFL-201ENST00000315249 Q6ZRP5 223 aa9.23□□□□□ -0.93
RFFL-201ENST00000315249 WDFY4Q6ZS81 3184 aa9.23□□□□□ -0.93
RFFL-201ENST00000315249 PRR15LQ9BU68 103 aa9.23□□□□□ -0.93
RFFL-201ENST00000315249 SPTSSBQ8NFR3 76 aa9.22□□□□□ -0.93
RFFL-201ENST00000315249 RPL37AP61513 92 aaKnown RBP9.21□□□□□ -0.94
RFFL-201ENST00000315249 LINC00208Q96KT6 92 aa9.21□□□□□ -0.94
RFFL-201ENST00000315249 KIAA0087Q14695 138 aa9.2□□□□□ -0.94
RFFL-201ENST00000315249 CHD9Q3L8U1 2897 aa9.2□□□□□ -0.94
RFFL-201ENST00000315249 SPINK1P00995 79 aa9.2□□□□□ -0.94
RFFL-201ENST00000315249 UNC80Q8N2C7 3258 aa9.19□□□□□ -0.94
RFFL-201ENST00000315249 KRTAP1-3Q8IUG1 177 aa9.19□□□□□ -0.94
RFFL-201ENST00000315249 CR1P17927 2039 aa9.19□□□□□ -0.94
RFFL-201ENST00000315249 J3KT08 172 aa9.18□□□□□ -0.94
RFFL-201ENST00000315249 UQCRQO14949 82 aa9.18□□□□□ -0.94
RFFL-201ENST00000315249 DNAH10OSP0CZ25 163 aa9.18□□□□□ -0.94
RFFL-201ENST00000315249 CRYGAP11844 174 aa9.18□□□□□ -0.94
RFFL-201ENST00000315249 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
RFFL-201ENST00000315249 IGKV2-30P06310 120 aa9.17□□□□□ -0.94
RFFL-201ENST00000315249 PCOTHQ58A44 107 aa9.17□□□□□ -0.94
RFFL-201ENST00000315249 SMR3BP02814 79 aaPredicted RBP9.16□□□□□ -0.94
RFFL-201ENST00000315249 SVIPQ8NHG7 77 aa9.16□□□□□ -0.94
RFFL-201ENST00000315249 BRK1Q8WUW1 75 aa9.16□□□□□ -0.94
RFFL-201ENST00000315249 C19orf73Q9NVV2 129 aa9.15□□□□□ -0.94
RFFL-201ENST00000315249 IGLV5-39A0A0G2JS06 123 aa9.15□□□□□ -0.95
RFFL-201ENST00000315249 EPM2AB3EWF7 344 aa9.14□□□□□ -0.95
RFFL-201ENST00000315249 HCG22E2RYF7 251 aa9.14□□□□□ -0.95
RFFL-201ENST00000315249 CSNK1G2-AS1Q8NCQ2 148 aa9.14□□□□□ -0.95
RFFL-201ENST00000315249 CELSR3Q9NYQ7 3312 aa9.13□□□□□ -0.95
RFFL-201ENST00000315249 TEP1Q99973 2627 aaKnown RBP9.13□□□□□ -0.95
RFFL-201ENST00000315249 TRANK1O15050 2925 aa9.13□□□□□ -0.95
RFFL-201ENST00000315249 TRBV7-6A0A0J9YX20 115 aa9.13□□□□□ -0.95
RFFL-201ENST00000315249 SERP2Q8N6R1 65 aa9.12□□□□□ -0.95
RFFL-201ENST00000315249 FAM168BA1KXE4 195 aa9.12□□□□□ -0.95
RFFL-201ENST00000315249 NDUFC1O43677 76 aa9.11□□□□□ -0.95
RFFL-201ENST00000315249 AKAP13Q12802 2813 aa9.11□□□□□ -0.95
RFFL-201ENST00000315249 GVQW2A0A096LPI5 108 aaPredicted RBP9.11□□□□□ -0.95
RFFL-201ENST00000315249 H0Y9P7 68 aa9.1□□□□□ -0.95
RFFL-201ENST00000315249 KRTAP1-1Q07627 177 aa9.1□□□□□ -0.95
RFFL-201ENST00000315249 TRIOO75962 3097 aa9.1□□□□□ -0.95
RFFL-201ENST00000315249 IMUPQ9GZP8 106 aa9.09□□□□□ -0.95
RFFL-201ENST00000315249 A0A087WVE0 104 aa9.09□□□□□ -0.95
RFFL-201ENST00000315249 TM2D3Q9BRN9 247 aa9.09□□□□□ -0.95
RFFL-201ENST00000315249 BCE1O60756 84 aa9.08□□□□□ -0.96
RFFL-201ENST00000315249 TEX15Q9BXT5 2789 aa9.08□□□□□ -0.96
RFFL-201ENST00000315249 SETXQ7Z333 2677 aaKnown RBP9.08□□□□□ -0.96
RFFL-201ENST00000315249 VPS13AQ96RL7 3174 aa9.07□□□□□ -0.96
RFFL-201ENST00000315249 A6NED7 52 aa9.06□□□□□ -0.96
RFFL-201ENST00000315249 ST20-AS1Q8NBB2 130 aa9.06□□□□□ -0.96
RFFL-201ENST00000315249 Q6ZRX8 168 aa9.05□□□□□ -0.96
RFFL-201ENST00000315249 Q8NBF4 154 aa9.05□□□□□ -0.96
RFFL-201ENST00000315249 LINC01546A6NGU7 62 aa9.04□□□□□ -0.96
RFFL-201ENST00000315249 LINC00313P59037 77 aa9.04□□□□□ -0.96
RFFL-201ENST00000315249 IGLV5-45A0A087WSX0 123 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 A0A087WTM6 91 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 LINC00476Q8WZB0 136 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 TRAV7A0A075B6U4 112 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 C7orf65Q6ZTY9 151 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 KLK9Q2XQG4 91 aa9.03□□□□□ -0.96
RFFL-201ENST00000315249 hDV103S1A0JD37 113 aa9.02□□□□□ -0.96
RFFL-201ENST00000315249 ELOF1P60002 83 aaKnown RBP9.02□□□□□ -0.97
RFFL-201ENST00000315249 V9GYY9 64 aa9.02□□□□□ -0.97
RFFL-201ENST00000315249 BAHCC1Q9P281 2608 aa9.02□□□□□ -0.97
RFFL-201ENST00000315249 ATP5EP56381 51 aaPredicted RBP9.02□□□□□ -0.97
RFFL-201ENST00000315249 SOSTDC1Q6X4U4 206 aa9.02□□□□□ -0.97
RFFL-201ENST00000315249 Q96NJ1 140 aa9.02□□□□□ -0.97
RFFL-201ENST00000315249 GIG44P09565 113 aaPredicted RBP9.01□□□□□ -0.97
RFFL-201ENST00000315249 COX7CP15954 63 aa9.01□□□□□ -0.97
RFFL-201ENST00000315249 LINC00846Q9NV44 126 aa9□□□□□ -0.97
RFFL-201ENST00000315249 SERTAD4-AS1Q5TG53 156 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms