RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PKD1L2Q7Z442 2459 aa8.05□□□□□ -1.12
PTPN4-201ENST00000263708 MTORP42345 2549 aa8.05□□□□□ -1.12
PTPN4-201ENST00000263708 IGLV1-51P01701 117 aa8.05□□□□□ -1.12
PTPN4-201ENST00000263708 Q6ZPA2 131 aa8.04□□□□□ -1.12
PTPN4-201ENST00000263708 ZNF580Q9UK33 172 aa8.04□□□□□ -1.12
PTPN4-201ENST00000263708 C16orf90A8MZG2 172 aa8.03□□□□□ -1.12
PTPN4-201ENST00000263708 LINC00846Q9NV44 126 aa8.02□□□□□ -1.12
PTPN4-201ENST00000263708 FHL3Q13643 280 aa8.01□□□□□ -1.13
PTPN4-201ENST00000263708 Q6ZSN1 163 aa8.01□□□□□ -1.13
PTPN4-201ENST00000263708 A0A1B0GUV1 79 aa8.01□□□□□ -1.13
PTPN4-201ENST00000263708 AVPP01185 164 aa8□□□□□ -1.13
PTPN4-201ENST00000263708 TRAV22A0A0B4J277 110 aa8□□□□□ -1.13
PTPN4-201ENST00000263708 CRIPTQ9P021 101 aa8□□□□□ -1.13
PTPN4-201ENST00000263708 CNFNQ9BYD5 112 aa7.99□□□□□ -1.13
PTPN4-201ENST00000263708 ZNF462Q96JM2 2506 aa7.99□□□□□ -1.13
PTPN4-201ENST00000263708 AMELXQ99217 191 aa7.98□□□□□ -1.13
PTPN4-201ENST00000263708 POLQO75417 2590 aa7.97□□□□□ -1.13
PTPN4-201ENST00000263708 KRTAP10-9P60411 292 aa7.97□□□□□ -1.13
PTPN4-201ENST00000263708 PRO0628Q9UI54 55 aa7.97□□□□□ -1.13
PTPN4-201ENST00000263708 MUC22E2RYF6 1773 aaPredicted RBP7.97□□□□□ -1.13
PTPN4-201ENST00000263708 SPATA3Q8NHX4 192 aa7.97□□□□□ -1.13
PTPN4-201ENST00000263708 PHF5AQ7RTV0 110 aaKnown RBP7.96□□□□□ -1.13
PTPN4-201ENST00000263708 RTL8CO15255 209 aa7.96□□□□□ -1.14
PTPN4-201ENST00000263708 RPL37AP61513 92 aaKnown RBP7.96□□□□□ -1.14
PTPN4-201ENST00000263708 C4orf26Q17RF5 130 aa7.95□□□□□ -1.14
PTPN4-201ENST00000263708 LINC00167Q96N53 147 aa7.95□□□□□ -1.14
PTPN4-201ENST00000263708 C16orf95Q9H693 158 aa7.95□□□□□ -1.14
PTPN4-201ENST00000263708 USP9YO00507 2555 aaPredicted RBP7.95□□□□□ -1.14
PTPN4-201ENST00000263708 CDSNQ15517 529 aa7.95□□□□□ -1.14
PTPN4-201ENST00000263708 Q8NBF4 154 aa7.94□□□□□ -1.14
PTPN4-201ENST00000263708 Q6ZRP5 223 aa7.94□□□□□ -1.14
PTPN4-201ENST00000263708 LINC01600Q96MT4 127 aa7.93□□□□□ -1.14
PTPN4-201ENST00000263708 LINC01561Q8N1V8 128 aa7.93□□□□□ -1.14
PTPN4-201ENST00000263708 EPM2AB3EWF7 344 aa7.91□□□□□ -1.14
PTPN4-201ENST00000263708 LINC00476Q8WZB0 136 aa7.91□□□□□ -1.14
PTPN4-201ENST00000263708 USP24Q9UPU5 2620 aa7.91□□□□□ -1.14
PTPN4-201ENST00000263708 CRIP3Q6Q6R5 217 aa7.91□□□□□ -1.14
PTPN4-201ENST00000263708 KIF25-AS1Q9Y6Z4 181 aa7.9□□□□□ -1.14
PTPN4-201ENST00000263708 FASNP49327 2511 aaKnown RBP7.9□□□□□ -1.14
PTPN4-201ENST00000263708 FAM19A4Q96LR4 140 aa7.9□□□□□ -1.14
PTPN4-201ENST00000263708 LINC01554Q52M75 96 aa7.89□□□□□ -1.15
PTPN4-201ENST00000263708 IGLV6-57P01721 117 aa7.88□□□□□ -1.15
PTPN4-201ENST00000263708 C9orf129Q5T035 196 aaKnown RBP7.88□□□□□ -1.15
PTPN4-201ENST00000263708 PCSK5Q92824 1860 aa7.88□□□□□ -1.15
PTPN4-201ENST00000263708 C9orf92A6NGG3 77 aa7.88□□□□□ -1.15
PTPN4-201ENST00000263708 LINC00315P59091 139 aa7.87□□□□□ -1.15
PTPN4-201ENST00000263708 C11orf72Q8NBR9 251 aa7.86□□□□□ -1.15
PTPN4-201ENST00000263708 PRRC2CQ9Y520 2896 aaKnown RBP7.86□□□□□ -1.15
PTPN4-201ENST00000263708 H3BPC8 53 aa7.85□□□□□ -1.15
PTPN4-201ENST00000263708 Q6ZRX8 168 aa7.84□□□□□ -1.15
PTPN4-201ENST00000263708 CDIP1Q9H305 208 aa7.84□□□□□ -1.15
PTPN4-201ENST00000263708 ST20-AS1Q8NBB2 130 aa7.84□□□□□ -1.15
PTPN4-201ENST00000263708 ELOF1P60002 83 aaKnown RBP7.84□□□□□ -1.16
PTPN4-201ENST00000263708 URB1-AS1Q96HZ7 61 aa7.83□□□□□ -1.16
PTPN4-201ENST00000263708 A0A0D9SG42 100 aa7.82□□□□□ -1.16
PTPN4-201ENST00000263708 UQCR11O14957 56 aa7.82□□□□□ -1.16
PTPN4-201ENST00000263708 LOC101927531A0A1B0GV80 90 aa7.82□□□□□ -1.16
PTPN4-201ENST00000263708 TM2D3Q9BRN9 247 aa7.82□□□□□ -1.16
PTPN4-201ENST00000263708 NBDYA0A0U1RRE5 68 aa7.81□□□□□ -1.16
PTPN4-201ENST00000263708 Q6ZQT0 140 aa7.81□□□□□ -1.16
PTPN4-201ENST00000263708 COA5Q86WW8 74 aa7.81□□□□□ -1.16
PTPN4-201ENST00000263708 BCE1O60756 84 aa7.81□□□□□ -1.16
PTPN4-201ENST00000263708 OBSCN-AS1Q96MR7 158 aa7.81□□□□□ -1.16
PTPN4-201ENST00000263708 MIR22HGQ0VDD5 57 aa7.8□□□□□ -1.16
PTPN4-201ENST00000263708 K7EQZ3 153 aa7.79□□□□□ -1.16
PTPN4-201ENST00000263708 DSCR10P59022 87 aa7.79□□□□□ -1.16
PTPN4-201ENST00000263708 LUZP6Q538Z0 58 aa7.79□□□□□ -1.16
PTPN4-201ENST00000263708 LINC00310P59036 64 aa7.78□□□□□ -1.16
PTPN4-201ENST00000263708 IGLV5-37A0A075B6J1 123 aa7.78□□□□□ -1.16
PTPN4-201ENST00000263708 FAM168BA1KXE4 195 aa7.78□□□□□ -1.16
PTPN4-201ENST00000263708 A8MWP4 228 aa7.78□□□□□ -1.16
PTPN4-201ENST00000263708 FAM218AQ96MZ4 157 aa7.77□□□□□ -1.17
PTPN4-201ENST00000263708 RBM12B-AS1Q9P1G2 102 aa7.77□□□□□ -1.17
PTPN4-201ENST00000263708 A0A1B0GW54 56 aa7.77□□□□□ -1.17
PTPN4-201ENST00000263708 LINC00304Q8N9R0 145 aa7.77□□□□□ -1.17
PTPN4-201ENST00000263708 MRPL34Q9BQ48 92 aaKnown RBP7.76□□□□□ -1.17
PTPN4-201ENST00000263708 TRBV7-4A0A0J9YYF1 115 aa7.76□□□□□ -1.17
PTPN4-201ENST00000263708 IGHV3OR16-9A0A0B4J2B5 98 aa7.75□□□□□ -1.17
PTPN4-201ENST00000263708 IGLV5-39A0A0G2JS06 123 aa7.75□□□□□ -1.17
PTPN4-201ENST00000263708 EPG5Q9HCE0 2579 aa7.75□□□□□ -1.17
PTPN4-201ENST00000263708 LOC110117498A0A087WWA1 95 aa7.75□□□□□ -1.17
PTPN4-201ENST00000263708 FLG2Q5D862 2391 aaPredicted RBP7.74□□□□□ -1.17
PTPN4-201ENST00000263708 LINC00588Q9Y4M8 146 aa7.74□□□□□ -1.17
PTPN4-201ENST00000263708 A0A096LNJ9 63 aa7.73□□□□□ -1.17
PTPN4-201ENST00000263708 A8MUN3 132 aa7.72□□□□□ -1.17
PTPN4-201ENST00000263708 CDC42SE1Q9NRR8 79 aa7.72□□□□□ -1.17
PTPN4-201ENST00000263708 WWC2-AS2Q96NR7 200 aa7.72□□□□□ -1.17
PTPN4-201ENST00000263708 ZNF575Q86XF7 245 aa7.72□□□□□ -1.17
PTPN4-201ENST00000263708 H3BNG1 76 aa7.69□□□□□ -1.18
PTPN4-201ENST00000263708 COX8CQ7Z4L0 72 aa7.69□□□□□ -1.18
PTPN4-201ENST00000263708 SMR3BP02814 79 aaPredicted RBP7.69□□□□□ -1.18
PTPN4-201ENST00000263708 GVQW2A0A096LPI5 108 aaPredicted RBP7.68□□□□□ -1.18
PTPN4-201ENST00000263708 CYP4F30PQ9H0H9 118 aa7.68□□□□□ -1.18
PTPN4-201ENST00000263708 RPS28P62857 69 aaKnown RBP7.68□□□□□ -1.18
PTPN4-201ENST00000263708 A0A1W2PPR1 153 aa7.68□□□□□ -1.18
PTPN4-201ENST00000263708 IGLV5-48A0A075B6I7 105 aa7.67□□□□□ -1.18
PTPN4-201ENST00000263708 CSNK1G2-AS1Q8NCQ2 148 aa7.67□□□□□ -1.18
PTPN4-201ENST00000263708 CR1P17927 2039 aa7.67□□□□□ -1.18
PTPN4-201ENST00000263708 PRO3102Q9H379 93 aa7.67□□□□□ -1.18
PTPN4-201ENST00000263708 LINC00483Q53H64 154 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms