RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TMEM254Q8TBM7 123 aa13.27□□□□□ -0.28
UPF1-201ENST00000262803 PCOTHQ58A44 107 aa13.26□□□□□ -0.29
UPF1-201ENST00000262803 IGLV5-45A0A087WSX0 123 aa13.25□□□□□ -0.29
UPF1-201ENST00000262803 H3BPC8 53 aa13.25□□□□□ -0.29
UPF1-201ENST00000262803 SMCPP49901 116 aaPredicted RBP13.23□□□□□ -0.29
UPF1-201ENST00000262803 SOSTDC1Q6X4U4 206 aa13.23□□□□□ -0.29
UPF1-201ENST00000262803 Q8NBF4 154 aa13.23□□□□□ -0.29
UPF1-201ENST00000262803 SBSPONQ8IVN8 264 aa13.22□□□□□ -0.29
UPF1-201ENST00000262803 C1orf64Q8NEQ6 169 aa13.22□□□□□ -0.29
UPF1-201ENST00000262803 LINC00167Q96N53 147 aa13.22□□□□□ -0.29
UPF1-201ENST00000262803 PTPRBP23467 1997 aa13.21□□□□□ -0.29
UPF1-201ENST00000262803 Q6ZRP5 223 aa13.21□□□□□ -0.29
UPF1-201ENST00000262803 Q9UF83 564 aa13.21□□□□□ -0.3
UPF1-201ENST00000262803 FASNP49327 2511 aaKnown RBP13.2□□□□□ -0.3
UPF1-201ENST00000262803 ACANP16112 2415 aa13.2□□□□□ -0.3
UPF1-201ENST00000262803 CRYGAP11844 174 aa13.2□□□□□ -0.3
UPF1-201ENST00000262803 KIAA0087Q14695 138 aa13.2□□□□□ -0.3
UPF1-201ENST00000262803 RETNLBQ9BQ08 111 aa13.19□□□□□ -0.3
UPF1-201ENST00000262803 PRO0461Q9UI25 63 aa13.18□□□□□ -0.3
UPF1-201ENST00000262803 NBDYA0A0U1RRE5 68 aa13.18□□□□□ -0.3
UPF1-201ENST00000262803 ELOF1P60002 83 aaKnown RBP13.18□□□□□ -0.3
UPF1-201ENST00000262803 C6orf48Q9UBA6 75 aa13.18□□□□□ -0.3
UPF1-201ENST00000262803 SPINK1P00995 79 aa13.17□□□□□ -0.3
UPF1-201ENST00000262803 ACYP2P14621 99 aa13.16□□□□□ -0.3
UPF1-201ENST00000262803 PMAIP1Q13794 54 aa13.16□□□□□ -0.3
UPF1-201ENST00000262803 DEFB116Q30KQ4 102 aa13.16□□□□□ -0.3
UPF1-201ENST00000262803 C16orf90A8MZG2 172 aa13.16□□□□□ -0.3
UPF1-201ENST00000262803 C7orf65Q6ZTY9 151 aa13.15□□□□□ -0.3
UPF1-201ENST00000262803 MUC4Q99102 2169 aa13.15□□□□□ -0.3
UPF1-201ENST00000262803 KLK9Q2XQG4 91 aa13.15□□□□□ -0.3
UPF1-201ENST00000262803 SPATA3Q8NHX4 192 aa13.15□□□□□ -0.3
UPF1-201ENST00000262803 ANKRD17O75179 2603 aaKnown RBP13.15□□□□□ -0.3
UPF1-201ENST00000262803 MOBPQ13875 183 aa13.15□□□□□ -0.31
UPF1-201ENST00000262803 RTL8CO15255 209 aa13.14□□□□□ -0.31
UPF1-201ENST00000262803 IGKV2D-30A0A075B6S6 120 aa13.13□□□□□ -0.31
UPF1-201ENST00000262803 IGKV2-30P06310 120 aa13.13□□□□□ -0.31
UPF1-201ENST00000262803 WWC2-AS2Q96NR7 200 aa13.13□□□□□ -0.31
UPF1-201ENST00000262803 GVQW2A0A096LPI5 108 aaPredicted RBP13.13□□□□□ -0.31
UPF1-201ENST00000262803 PLA2G1BP04054 148 aaKnown RBP13.12□□□□□ -0.31
UPF1-201ENST00000262803 Q6ZRX8 168 aa13.12□□□□□ -0.31
UPF1-201ENST00000262803 FAM218AQ96MZ4 157 aa13.12□□□□□ -0.31
UPF1-201ENST00000262803 KRTAP24-1Q3LI83 254 aa13.12□□□□□ -0.31
UPF1-201ENST00000262803 SPACA4Q8TDM5 124 aa13.11□□□□□ -0.31
UPF1-201ENST00000262803 LOC110117498A0A087WWA1 95 aa13.11□□□□□ -0.31
UPF1-201ENST00000262803 PRRC2CQ9Y520 2896 aaKnown RBP13.1□□□□□ -0.31
UPF1-201ENST00000262803 COL4A2P08572 1712 aa13.1□□□□□ -0.31
UPF1-201ENST00000262803 PCNTO95613 3336 aa13.09□□□□□ -0.31
UPF1-201ENST00000262803 C8orf87E5RJ46 101 aa13.09□□□□□ -0.31
UPF1-201ENST00000262803 COL27A1Q8IZC6 1860 aaPredicted RBP13.08□□□□□ -0.31
UPF1-201ENST00000262803 TYMSOSQ8TAI1 123 aa13.07□□□□□ -0.32
UPF1-201ENST00000262803 Q8NAQ8 132 aa13.07□□□□□ -0.32
UPF1-201ENST00000262803 SMIM29Q86T20 159 aa13.06□□□□□ -0.32
UPF1-201ENST00000262803 A0A1B0GU69 56 aa13.06□□□□□ -0.32
UPF1-201ENST00000262803 LINC00313P59037 77 aa13.05□□□□□ -0.32
UPF1-201ENST00000262803 DNAH10OSP0CZ25 163 aa13.04□□□□□ -0.32
UPF1-201ENST00000262803 PSPHP1O15172 72 aa13.02□□□□□ -0.33
UPF1-201ENST00000262803 LINC00476Q8WZB0 136 aa13.02□□□□□ -0.33
UPF1-201ENST00000262803 LINC00588Q9Y4M8 146 aa13.02□□□□□ -0.33
UPF1-201ENST00000262803 EPM2AB3EWF7 344 aa13.01□□□□□ -0.33
UPF1-201ENST00000262803 PCSK5Q92824 1860 aa12.99□□□□□ -0.33
UPF1-201ENST00000262803 PHF5AQ7RTV0 110 aaKnown RBP12.99□□□□□ -0.33
UPF1-201ENST00000262803 Q6ZQT0 140 aa12.99□□□□□ -0.33
UPF1-201ENST00000262803 TRBV7-4A0A0J9YYF1 115 aa12.98□□□□□ -0.33
UPF1-201ENST00000262803 LOC101927531A0A1B0GV80 90 aa12.98□□□□□ -0.33
UPF1-201ENST00000262803 EPG5Q9HCE0 2579 aa12.97□□□□□ -0.33
UPF1-201ENST00000262803 LITAFQ99732 161 aa12.97□□□□□ -0.33
UPF1-201ENST00000262803 DNAH12Q6ZR08 3092 aa12.97□□□□□ -0.33
UPF1-201ENST00000262803 TRAV22A0A0B4J277 110 aa12.96□□□□□ -0.33
UPF1-201ENST00000262803 ATP11AUNQ6ZP68 121 aa12.96□□□□□ -0.33
UPF1-201ENST00000262803 RPL37AP61513 92 aaKnown RBP12.93□□□□□ -0.34
UPF1-201ENST00000262803 SPAG11AQ6PDA7 123 aa12.91□□□□□ -0.34
UPF1-201ENST00000262803 IGLV6-57P01721 117 aa12.88□□□□□ -0.35
UPF1-201ENST00000262803 J3QL48 77 aa12.87□□□□□ -0.35
UPF1-201ENST00000262803 A8MWP4 228 aa12.87□□□□□ -0.35
UPF1-201ENST00000262803 F8P00451 2351 aa12.86□□□□□ -0.35
UPF1-201ENST00000262803 VPREB1P12018 145 aa12.86□□□□□ -0.35
UPF1-201ENST00000262803 ST20-AS1Q8NBB2 130 aa12.86□□□□□ -0.35
UPF1-201ENST00000262803 RPS28P62857 69 aaKnown RBP12.84□□□□□ -0.35
UPF1-201ENST00000262803 SSBP3-AS1Q7Z2R9 100 aa12.84□□□□□ -0.35
UPF1-201ENST00000262803 CEP350Q5VT06 3117 aa12.83□□□□□ -0.36
UPF1-201ENST00000262803 ERC2-IT1O76042 136 aa12.83□□□□□ -0.36
UPF1-201ENST00000262803 Q96NJ1 140 aa12.83□□□□□ -0.36
UPF1-201ENST00000262803 KCNQ1DNQ9H478 68 aa12.82□□□□□ -0.36
UPF1-201ENST00000262803 MRPL34Q9BQ48 92 aaKnown RBP12.81□□□□□ -0.36
UPF1-201ENST00000262803 IGLV1-50A0A075B6I6 118 aa12.81□□□□□ -0.36
UPF1-201ENST00000262803 C19orf73Q9NVV2 129 aa12.8□□□□□ -0.36
UPF1-201ENST00000262803 PRO0628Q9UI54 55 aa12.79□□□□□ -0.36
UPF1-201ENST00000262803 EIF4EBP3O60516 100 aaPredicted RBP12.79□□□□□ -0.36
UPF1-201ENST00000262803 CHTF8P0CG12 524 aa12.78□□□□□ -0.36
UPF1-201ENST00000262803 TM2D3Q9BRN9 247 aa12.78□□□□□ -0.36
UPF1-201ENST00000262803 LINC00336Q6ZUF6 198 aa12.77□□□□□ -0.37
UPF1-201ENST00000262803 CSNK1G2-AS1Q8NCQ2 148 aa12.76□□□□□ -0.37
UPF1-201ENST00000262803 PLA2G2DQ9UNK4 145 aa12.76□□□□□ -0.37
UPF1-201ENST00000262803 PRR34Q9NV39 138 aa12.74□□□□□ -0.37
UPF1-201ENST00000262803 USP24Q9UPU5 2620 aa12.73□□□□□ -0.37
UPF1-201ENST00000262803 TLX1NBP0CAT3 122 aa12.73□□□□□ -0.37
UPF1-201ENST00000262803 LINC00304Q8N9R0 145 aa12.72□□□□□ -0.37
UPF1-201ENST00000262803 FLNBO75369 2602 aaKnown RBP12.71□□□□□ -0.37
UPF1-201ENST00000262803 ZNF861PO60384 105 aa12.71□□□□□ -0.38
UPF1-201ENST00000262803 C4orf26Q17RF5 130 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms