RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 C1orf43Q9BWL3 253 aa8.66□□□□□ -1.02
SPTLC1-201ENST00000262554 TENM3Q9P273 2699 aa8.66□□□□□ -1.02
SPTLC1-201ENST00000262554 Q9HAA7 133 aa8.66□□□□□ -1.02
SPTLC1-201ENST00000262554 CMYA5Q8N3K9 4069 aa8.66□□□□□ -1.02
SPTLC1-201ENST00000262554 A0A087WYN8 130 aa8.65□□□□□ -1.02
SPTLC1-201ENST00000262554 C6orf48Q9UBA6 75 aa8.65□□□□□ -1.02
SPTLC1-201ENST00000262554 COL6A5A8TX70 2615 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 NCR3O14931 201 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 HIGD2BQ4VC39 106 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 CAMK2N2Q96S95 79 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 DNAH10OSP0CZ25 163 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 SCGB1A1P11684 91 aa8.64□□□□□ -1.03
SPTLC1-201ENST00000262554 IGKV2D-24A0A075B6R9 120 aa8.63□□□□□ -1.03
SPTLC1-201ENST00000262554 S100A7L2Q5SY68 101 aa8.63□□□□□ -1.03
SPTLC1-201ENST00000262554 LECT2O14960 151 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 XGP55808 180 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 C15orf56Q8N910 161 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 Q8NDZ9 215 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 DNAH3Q8TD57 4116 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 C2orf48Q96LS8 159 aa8.62□□□□□ -1.03
SPTLC1-201ENST00000262554 NOTCH1P46531 2555 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 FAM240AA0A1B0GVK7 77 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 A0A1B0GX51 115 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 F8WDY8 70 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 MT-ATP8P03928 68 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 C22orf24Q9Y442 160 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 LINC00588Q9Y4M8 146 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 ANK2Q01484 3957 aa8.6□□□□□ -1.03
SPTLC1-201ENST00000262554 INAFM2P0DMQ5 153 aa8.59□□□□□ -1.03
SPTLC1-201ENST00000262554 Q6ZRU5 148 aa8.59□□□□□ -1.03
SPTLC1-201ENST00000262554 SNCGO76070 127 aa8.58□□□□□ -1.04
SPTLC1-201ENST00000262554 RPL18AQ02543 176 aaKnown RBP8.58□□□□□ -1.04
SPTLC1-201ENST00000262554 C6orf99Q4VX62 202 aa8.58□□□□□ -1.04
SPTLC1-201ENST00000262554 XAGE1AQ9HD64 81 aa8.58□□□□□ -1.04
SPTLC1-201ENST00000262554 ORMDL1Q9P0S3 153 aa8.58□□□□□ -1.04
SPTLC1-201ENST00000262554 IGLV6-57P01721 117 aa8.57□□□□□ -1.04
SPTLC1-201ENST00000262554 ACYP1P07311 99 aa8.57□□□□□ -1.04
SPTLC1-201ENST00000262554 Q8N814 137 aa8.57□□□□□ -1.04
SPTLC1-201ENST00000262554 NDUFC2-KCTD14E9PQ53 114 aa8.56□□□□□ -1.04
SPTLC1-201ENST00000262554 SLPIP03973 132 aa8.56□□□□□ -1.04
SPTLC1-201ENST00000262554 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
SPTLC1-201ENST00000262554 SYCNQ0VAF6 134 aa8.55□□□□□ -1.04
SPTLC1-201ENST00000262554 RMI2Q96E14 147 aa8.54□□□□□ -1.04
SPTLC1-201ENST00000262554 NBEAL1Q6ZS30 2694 aa8.54□□□□□ -1.04
SPTLC1-201ENST00000262554 UPK3BQ9BT76 320 aa8.53□□□□□ -1.04
SPTLC1-201ENST00000262554 TRBV10-3A0A0K0K1G6 114 aa8.53□□□□□ -1.04
SPTLC1-201ENST00000262554 VPREB1P12018 145 aa8.53□□□□□ -1.04
SPTLC1-201ENST00000262554 LINC00575Q6W349 94 aa8.53□□□□□ -1.04
SPTLC1-201ENST00000262554 OBSCN-AS1Q96MR7 158 aa8.53□□□□□ -1.04
SPTLC1-201ENST00000262554 TRAV23DV6A0A075B6W5 121 aa8.52□□□□□ -1.05
SPTLC1-201ENST00000262554 GAGE2EQ4V326 116 aa8.52□□□□□ -1.05
SPTLC1-201ENST00000262554 GAGE2DQ9UEU5 116 aa8.52□□□□□ -1.05
SPTLC1-201ENST00000262554 TMEM256-PLSCR3K7ERE1 68 aa8.51□□□□□ -1.05
SPTLC1-201ENST00000262554 hADV29S1A0JD25 119 aa8.51□□□□□ -1.05
SPTLC1-201ENST00000262554 M0R378 163 aa8.51□□□□□ -1.05
SPTLC1-201ENST00000262554 GAGE2AQ6NT46 116 aa8.51□□□□□ -1.05
SPTLC1-201ENST00000262554 DIRC1Q969H9 104 aa8.51□□□□□ -1.05
SPTLC1-201ENST00000262554 C9orf129Q5T035 196 aaKnown RBP8.5□□□□□ -1.05
SPTLC1-201ENST00000262554 Q6ZRP5 223 aa8.5□□□□□ -1.05
SPTLC1-201ENST00000262554 C14orf132Q9NPU4 83 aa8.5□□□□□ -1.05
SPTLC1-201ENST00000262554 USP17L23D6RBM5 183 aa8.49□□□□□ -1.05
SPTLC1-201ENST00000262554 TTC32Q5I0X7 151 aa8.49□□□□□ -1.05
SPTLC1-201ENST00000262554 GAGE2BQ13066 116 aa8.49□□□□□ -1.05
SPTLC1-201ENST00000262554 B9D2Q9BPU9 175 aa8.49□□□□□ -1.05
SPTLC1-201ENST00000262554 JMJD7-PLA2G4BH0Y9G9 81 aa8.48□□□□□ -1.05
SPTLC1-201ENST00000262554 ZNF73O43830 326 aaPredicted RBP8.48□□□□□ -1.05
SPTLC1-201ENST00000262554 TRBV7-6A0A0J9YX20 115 aa8.47□□□□□ -1.05
SPTLC1-201ENST00000262554 TLX1NBP0CAT3 122 aa8.47□□□□□ -1.05
SPTLC1-201ENST00000262554 COX7BP24311 80 aa8.47□□□□□ -1.05
SPTLC1-201ENST00000262554 CASC10Q5T4H9 136 aa8.47□□□□□ -1.05
SPTLC1-201ENST00000262554 Q6Q795 121 aa8.47□□□□□ -1.05
SPTLC1-201ENST00000262554 MGAM2Q2M2H8 2515 aa8.46□□□□□ -1.06
SPTLC1-201ENST00000262554 H3BQ85 93 aa8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 A0A1B0GV72 72 aa8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 ELOF1P60002 83 aaKnown RBP8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 SDIM1Q6ZPB5 146 aa8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 LINC00643Q86TS7 51 aa8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 NKAPP1Q8N9T2 125 aa8.45□□□□□ -1.06
SPTLC1-201ENST00000262554 UBE2DNLQ8IWF7 75 aa8.44□□□□□ -1.06
SPTLC1-201ENST00000262554 SMCR5Q8TEV8 140 aa8.44□□□□□ -1.06
SPTLC1-201ENST00000262554 Q6ZQY7 126 aa8.43□□□□□ -1.06
SPTLC1-201ENST00000262554 APLNQ9ULZ1 77 aa8.43□□□□□ -1.06
SPTLC1-201ENST00000262554 TRBV7-7A0A0K0K1E9 115 aa8.42□□□□□ -1.06
SPTLC1-201ENST00000262554 CCKP06307 115 aa8.42□□□□□ -1.06
SPTLC1-201ENST00000262554 PLA2G2DQ9UNK4 145 aa8.42□□□□□ -1.06
SPTLC1-201ENST00000262554 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.41□□□□□ -1.06
SPTLC1-201ENST00000262554 HUWE1Q7Z6Z7 4374 aaKnown RBP8.41□□□□□ -1.06
SPTLC1-201ENST00000262554 SERTAD4-AS1Q5TG53 156 aa8.4□□□□□ -1.06
SPTLC1-201ENST00000262554 LAMTOR3Q9UHA4 124 aa8.4□□□□□ -1.06
SPTLC1-201ENST00000262554 IMUPQ9GZP8 106 aa8.4□□□□□ -1.07
SPTLC1-201ENST00000262554 LOC107984640A0A0U1RRK4 108 aa8.39□□□□□ -1.07
SPTLC1-201ENST00000262554 NHLRC4P0CG21 123 aaPredicted RBP8.39□□□□□ -1.07
SPTLC1-201ENST00000262554 RBM3P98179 157 aaKnown RBP8.39□□□□□ -1.07
SPTLC1-201ENST00000262554 C7orf33Q8WU49 177 aa8.39□□□□□ -1.07
SPTLC1-201ENST00000262554 KCNQ1DNQ9H478 68 aa8.39□□□□□ -1.07
SPTLC1-201ENST00000262554 ANAPC13Q9BS18 74 aa8.38□□□□□ -1.07
SPTLC1-201ENST00000262554 KRTAP1-5Q9BYS1 174 aa8.38□□□□□ -1.07
SPTLC1-201ENST00000262554 COL7A1Q02388 2944 aa8.38□□□□□ -1.07
SPTLC1-201ENST00000262554 IGLV5-37A0A075B6J1 123 aa8.38□□□□□ -1.07
SPTLC1-201ENST00000262554 PSCAO43653 123 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms