RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 SPATA45Q537H7 98 aa8.86□□□□□ -0.99
VPS25-201ENST00000253794 BOD1L2Q8IYS8 172 aa8.86□□□□□ -0.99
VPS25-201ENST00000253794 TP73-AS1Q9UF72 201 aa8.86□□□□□ -0.99
VPS25-201ENST00000253794 A0A0U1RRA0 63 aa8.85□□□□□ -0.99
VPS25-201ENST00000253794 ADAMTSL4-AS1Q5T5F5 129 aa8.85□□□□□ -0.99
VPS25-201ENST00000253794 SERTAD4-AS1Q5TG53 156 aa8.85□□□□□ -0.99
VPS25-201ENST00000253794 PAM16Q9Y3D7 125 aa8.85□□□□□ -0.99
VPS25-201ENST00000253794 LOC105371267A0A1B0GV96 52 aa8.84□□□□□ -0.99
VPS25-201ENST00000253794 SCGB1D4Q6XE38 83 aa8.84□□□□□ -0.99
VPS25-201ENST00000253794 PPDPFQ9H3Y8 114 aa8.84□□□□□ -0.99
VPS25-201ENST00000253794 VPS13BQ7Z7G8 4022 aa8.84□□□□□ -0.99
VPS25-201ENST00000253794 TMEM238C9JI98 176 aa8.83□□□□□ -1
VPS25-201ENST00000253794 VPREB1P12018 145 aa8.83□□□□□ -1
VPS25-201ENST00000253794 Q6ZVH6 145 aa8.83□□□□□ -1
VPS25-201ENST00000253794 FAM19A5Q7Z5A7 132 aaPredicted RBP8.83□□□□□ -1
VPS25-201ENST00000253794 DAND5Q8N907 189 aa8.83□□□□□ -1
VPS25-201ENST00000253794 SPANXDQ9BXN6 97 aa8.83□□□□□ -1
VPS25-201ENST00000253794 SPANXCQ9NY87 97 aa8.83□□□□□ -1
VPS25-201ENST00000253794 M0QXV9 152 aa8.82□□□□□ -1
VPS25-201ENST00000253794 SMIM6P0DI80 62 aa8.82□□□□□ -1
VPS25-201ENST00000253794 RPL24P83731 157 aaKnown RBP8.82□□□□□ -1
VPS25-201ENST00000253794 Q8NDZ9 215 aa8.82□□□□□ -1
VPS25-201ENST00000253794 C22orf24Q9Y442 160 aa8.82□□□□□ -1
VPS25-201ENST00000253794 Q8N1X5 172 aa8.81□□□□□ -1
VPS25-201ENST00000253794 SPANXB1Q9NS25 103 aaPredicted RBP8.81□□□□□ -1
VPS25-201ENST00000253794 NDUFC2O95298 119 aa8.8□□□□□ -1
VPS25-201ENST00000253794 SOSTDC1Q6X4U4 206 aa8.8□□□□□ -1
VPS25-201ENST00000253794 PHF5AQ7RTV0 110 aaKnown RBP8.8□□□□□ -1
VPS25-201ENST00000253794 LINC00528Q8N1L1 170 aa8.8□□□□□ -1
VPS25-201ENST00000253794 LINC00308Q8TCZ7 52 aa8.8□□□□□ -1
VPS25-201ENST00000253794 C7orf33Q8WU49 177 aa8.8□□□□□ -1
VPS25-201ENST00000253794 EIF4EBP3O60516 100 aaPredicted RBP8.79□□□□□ -1
VPS25-201ENST00000253794 SMR3BP02814 79 aaPredicted RBP8.79□□□□□ -1
VPS25-201ENST00000253794 IFITM1P13164 125 aa8.79□□□□□ -1
VPS25-201ENST00000253794 LBHQ53QV2 105 aaPredicted RBP8.79□□□□□ -1
VPS25-201ENST00000253794 SLC25A34Q6PIV7 304 aa8.79□□□□□ -1
VPS25-201ENST00000253794 MRPL55Q7Z7F7 128 aaKnown RBP8.79□□□□□ -1
VPS25-201ENST00000253794 C14orf144Q96I85 54 aa8.79□□□□□ -1
VPS25-201ENST00000253794 MIEN1Q9BRT3 115 aa8.79□□□□□ -1
VPS25-201ENST00000253794 KRTAP17-1Q9BYP8 105 aa8.79□□□□□ -1
VPS25-201ENST00000253794 S100A12P80511 92 aa8.78□□□□□ -1
VPS25-201ENST00000253794 NKAPP1Q8N9T2 125 aa8.78□□□□□ -1
VPS25-201ENST00000253794 COPS9Q8WXC6 57 aa8.78□□□□□ -1
VPS25-201ENST00000253794 HIGD1BQ9P298 99 aa8.78□□□□□ -1
VPS25-201ENST00000253794 TRBV10-2A0A0K0K1G8 114 aa8.77□□□□□ -1.01
VPS25-201ENST00000253794 KRTAP10-4P60372 401 aaPredicted RBP8.77□□□□□ -1.01
VPS25-201ENST00000253794 FAM229AH3BQW9 127 aa8.76□□□□□ -1.01
VPS25-201ENST00000253794 LINC00167Q96N53 147 aa8.76□□□□□ -1.01
VPS25-201ENST00000253794 M0R378 163 aa8.75□□□□□ -1.01
VPS25-201ENST00000253794 Q5VSD8 79 aa8.75□□□□□ -1.01
VPS25-201ENST00000253794 C2orf91Q6ZV80 131 aa8.75□□□□□ -1.01
VPS25-201ENST00000253794 KRTAP11-1Q8IUC1 163 aa8.75□□□□□ -1.01
VPS25-201ENST00000253794 NPC2P61916 151 aa8.74□□□□□ -1.01
VPS25-201ENST00000253794 SRRM2Q9UQ35 2752 aaKnown RBP8.73□□□□□ -1.01
VPS25-201ENST00000253794 IGLV1-50A0A075B6I6 118 aa8.73□□□□□ -1.01
VPS25-201ENST00000253794 PLA2G1BP04054 148 aaKnown RBP8.73□□□□□ -1.01
VPS25-201ENST00000253794 RPL37AP61513 92 aaKnown RBP8.73□□□□□ -1.01
VPS25-201ENST00000253794 PRR3P79522 188 aaKnown RBP8.73□□□□□ -1.01
VPS25-201ENST00000253794 PSORS1C2Q9UIG4 136 aa8.73□□□□□ -1.01
VPS25-201ENST00000253794 UBE2BP63146 152 aa8.72□□□□□ -1.01
VPS25-201ENST00000253794 SRSF9Q13242 221 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS25-201ENST00000253794 MUSTN1Q8IVN3 82 aa8.72□□□□□ -1.01
VPS25-201ENST00000253794 IGKV2-28A0A075B6P5 120 aa8.71□□□□□ -1.02
VPS25-201ENST00000253794 IGKV2D-28P01615 120 aa8.71□□□□□ -1.02
VPS25-201ENST00000253794 LINC00518Q8N0U6 118 aa8.71□□□□□ -1.02
VPS25-201ENST00000253794 UQCR10Q9UDW1 63 aa8.71□□□□□ -1.02
VPS25-201ENST00000253794 GAGE10A6NGK3 116 aa8.7□□□□□ -1.02
VPS25-201ENST00000253794 NCR3O14931 201 aa8.7□□□□□ -1.02
VPS25-201ENST00000253794 IGLV6-57P01721 117 aa8.7□□□□□ -1.02
VPS25-201ENST00000253794 TAL2Q16559 108 aa8.7□□□□□ -1.02
VPS25-201ENST00000253794 RPL37AP8A6NKH3 93 aa8.69□□□□□ -1.02
VPS25-201ENST00000253794 HIST1H4GQ99525 98 aa8.69□□□□□ -1.02
VPS25-201ENST00000253794 PKHD1L1Q86WI1 4243 aa8.69□□□□□ -1.02
VPS25-201ENST00000253794 TRBV10-3A0A0K0K1G6 114 aa8.68□□□□□ -1.02
VPS25-201ENST00000253794 C12orf57Q99622 126 aa8.68□□□□□ -1.02
VPS25-201ENST00000253794 KCNQ1DNQ9H478 68 aa8.68□□□□□ -1.02
VPS25-201ENST00000253794 PRYO14603 147 aa8.67□□□□□ -1.02
VPS25-201ENST00000253794 DDTP30046 118 aa8.67□□□□□ -1.02
VPS25-201ENST00000253794 SPRR1AP35321 89 aa8.66□□□□□ -1.02
VPS25-201ENST00000253794 C1orf137Q5JT78 98 aa8.66□□□□□ -1.02
VPS25-201ENST00000253794 LINC00337Q8N6G1 96 aa8.66□□□□□ -1.02
VPS25-201ENST00000253794 KRTAP4-5Q9BYR2 181 aa8.66□□□□□ -1.02
VPS25-201ENST00000253794 TMEM126AQ9H061 195 aa8.66□□□□□ -1.02
VPS25-201ENST00000253794 A4D1N5 150 aa8.65□□□□□ -1.02
VPS25-201ENST00000253794 BCE1O60756 84 aa8.65□□□□□ -1.02
VPS25-201ENST00000253794 IGLV7-43P04211 117 aa8.65□□□□□ -1.02
VPS25-201ENST00000253794 REG3GQ6UW15 175 aa8.65□□□□□ -1.02
VPS25-201ENST00000253794 CBY1Q9Y3M2 126 aa8.65□□□□□ -1.02
VPS25-201ENST00000253794 KRTAP4-16G5E9R7 235 aaPredicted RBP8.64□□□□□ -1.03
VPS25-201ENST00000253794 HSD52Q0P140 79 aa8.64□□□□□ -1.03
VPS25-201ENST00000253794 S100A7L2Q5SY68 101 aa8.64□□□□□ -1.03
VPS25-201ENST00000253794 KRTAP13-1Q8IUC0 172 aa8.64□□□□□ -1.03
VPS25-201ENST00000253794 CEND1Q8N111 149 aa8.64□□□□□ -1.03
VPS25-201ENST00000253794 ABCA13Q86UQ4 5058 aa8.64□□□□□ -1.03
VPS25-201ENST00000253794 TRAV13-2A0A0B4J235 113 aa8.63□□□□□ -1.03
VPS25-201ENST00000253794 PRO1933Q9H354 126 aa8.63□□□□□ -1.03
VPS25-201ENST00000253794 HNRNPA3P51991 378 aaKnown RBP8.62□□□□□ -1.03
VPS25-201ENST00000253794 TRAV23DV6A0A075B6W5 121 aa8.61□□□□□ -1.03
VPS25-201ENST00000253794 H0Y9J4 135 aa8.61□□□□□ -1.03
VPS25-201ENST00000253794 SPINK6Q6UWN8 80 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms