RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 Q6AWC8 147 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 HRCT1Q6UXD1 115 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 SDIM1Q6ZPB5 146 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 C5orf38Q86SI9 138 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 BPIFA4PQ86YQ2 179 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 C10orf126Q8N4M7 172 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 PACRGLQ8N7B6 248 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 C9orf163Q8N9P6 203 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TMEM229BQ8NBD8 167 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 DYNC2LI1Q8TCX1 351 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 RNASEH2CQ8TDP1 164 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MITD1Q8WV92 249 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 ASB13Q8WXK3 278 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 OBSCN-AS1Q96MR7 158 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 LINC01600Q96MT4 127 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MAP1LC3CQ9BXW4 147 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MRPL32Q9BYC8 188 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MAP1LC3BQ9GZQ8 125 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 WDR61Q9GZS3 305 aaKnown RBP0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 GTSF1LQ9H1H1 148 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 UQCC1Q9NVA1 299 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MED9Q9NWA0 146 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 PLAC8Q9NZF1 115 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TOMM7Q9P0U1 55 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TP73-AS1Q9UF72 201 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 HSPB11Q9Y547 144 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 TIMM9Q9Y5J7 89 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 ALG5Q9Y673 324 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 AHNAK2Q8IVF2 5795 aa0.38□□□□□ -2.35
SMARCB1-209ENST00000635578 KMT2DO14686 5537 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 DSTQ03001 7570 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV25-1A0A075B6N4 114 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FXYD6-FXYD2A0A087WZ82 144 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 GVQW2A0A096LPI5 108 aaPredicted RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV6-8A0A0A6YYG3 113 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TRAV13-1A0A0B4J241 112 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TRAV21A0A0B4J279 112 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 IGHV1-24A0A0C4DH33 117 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A0D9SG52 128 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TRBV6-1A0A0K0K1D8 114 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A1B0GV72 72 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A1B0GVG6 124 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 A0A1B0GW15 77 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 RBAKDNA6NC62 111 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FABP12A6NFH5 140 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 SNRPGP15A8MWD9 76 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 INMT-MINDY4F8WBC2 141 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 M0R2T5 61 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2L6O14933 153 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 PLA2G10O15496 165 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 ARPC5O15511 151 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 LYRM1O43325 122 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NDUFS6O75380 124 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NDUFB6O95139 128 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NPYP01303 97 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 ORM1P02763 201 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 CTXN2P0C2S0 81 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NBEAP1P0C6P0 100 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 SPINK8P0C7L1 97 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 HIST1H1EP10412 219 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FGF6P10767 208 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 CXCL2P19875 107 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 S100GP29377 79 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 GCHFRP30047 84 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 RPL5P46777 297 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 INPP1P49441 399 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 SULT1A1P50225 295 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 CEBPGP53567 150 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TMBIM6P55061 237 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 MP68P56378 58 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 H2BFSP57053 126 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NPC2P61916 151 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 UBE2G1P62253 170 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 EIF5AP63241 154 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 SS18Q15532 418 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 IQCJQ1A5X6 159 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FAM229BQ4G0N7 80 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 C9orf153Q5TBE3 101 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 RPL7L1Q6DKI1 246 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 MRPL54Q6P161 138 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 Q6Q795 121 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 UNQ6190/PRO20217Q6UXQ8 127 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 COX6B2Q6YFQ2 88 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FAM19A3Q7Z5A8 133 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FAM19A1Q7Z5A9 133 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 STX12Q86Y82 276 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 TOMM5Q8N4H5 51 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 C5orf17Q8NAS9 161 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NUP35Q8NFH5 326 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 OR5A1Q8NGJ0 315 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 FAM213BQ8TBF2 198 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 S100A16Q96FQ6 103 aaKnown RBP0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 AP1S3Q96PC3 154 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 ODF3Q96PU9 254 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 PFDN5Q99471 154 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 PRRT1Q99946 306 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 MIEN1Q9BRT3 115 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 PRADC1Q9BSG0 188 aa0.37□□□□□ -2.35
SMARCB1-209ENST00000635578 NMES1Q9C002 83 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 171.9 ms