RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 LINC00336Q6ZUF6 198 aa10.95□□□□□ -0.66
COL5A1-208ENST00000618395 LINC01561Q8N1V8 128 aa10.95□□□□□ -0.66
COL5A1-208ENST00000618395 LCA10Q71F78 164 aa10.95□□□□□ -0.66
COL5A1-208ENST00000618395 CR1P17927 2039 aa10.95□□□□□ -0.66
COL5A1-208ENST00000618395 C7orf33Q8WU49 177 aa10.94□□□□□ -0.66
COL5A1-208ENST00000618395 SMAD5-AS1Q9Y6J3 95 aa10.94□□□□□ -0.66
COL5A1-208ENST00000618395 SMIM1B2RUZ4 78 aa10.94□□□□□ -0.66
COL5A1-208ENST00000618395 PRLHP81277 87 aa10.94□□□□□ -0.66
COL5A1-208ENST00000618395 DEFB113Q30KQ7 82 aa10.94□□□□□ -0.66
COL5A1-208ENST00000618395 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.94□□□□□ -0.66
COL5A1-208ENST00000618395 SSBP3-AS1Q7Z2R9 100 aa10.93□□□□□ -0.66
COL5A1-208ENST00000618395 LINC00574Q9H8X3 128 aa10.93□□□□□ -0.66
COL5A1-208ENST00000618395 C11orf45Q8TAV5 145 aa10.92□□□□□ -0.66
COL5A1-208ENST00000618395 H3BPC8 53 aa10.92□□□□□ -0.66
COL5A1-208ENST00000618395 BRWD1-AS2P59051 145 aa10.92□□□□□ -0.66
COL5A1-208ENST00000618395 LINC00242Q5T6M2 205 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 FAM215AQ9Y5M1 114 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 POLQO75417 2590 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 PRR3P79522 188 aaKnown RBP10.91□□□□□ -0.66
COL5A1-208ENST00000618395 C6orf48Q9UBA6 75 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 FHL2Q14192 279 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 REG3GQ6UW15 175 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 CYSRT1A8MQ03 144 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 COL4A6Q14031 1691 aa10.91□□□□□ -0.66
COL5A1-208ENST00000618395 PRO0461Q9UI25 63 aa10.9□□□□□ -0.66
COL5A1-208ENST00000618395 SMCPP49901 116 aaPredicted RBP10.9□□□□□ -0.66
COL5A1-208ENST00000618395 EP400Q96L91 3159 aa10.9□□□□□ -0.67
COL5A1-208ENST00000618395 LINC00474Q9P2X8 69 aa10.9□□□□□ -0.67
COL5A1-208ENST00000618395 KLLNB2CW77 178 aa10.89□□□□□ -0.67
COL5A1-208ENST00000618395 DEFB116Q30KQ4 102 aa10.89□□□□□ -0.67
COL5A1-208ENST00000618395 COX6A2Q02221 97 aa10.89□□□□□ -0.67
COL5A1-208ENST00000618395 PLA2G1BP04054 148 aaKnown RBP10.88□□□□□ -0.67
COL5A1-208ENST00000618395 Q8N7P7 452 aa10.88□□□□□ -0.67
COL5A1-208ENST00000618395 C9orf116Q5BN46 136 aaPredicted RBP10.88□□□□□ -0.67
COL5A1-208ENST00000618395 A0A087WSZ3 146 aa10.87□□□□□ -0.67
COL5A1-208ENST00000618395 KPRPQ5T749 579 aaPredicted RBP10.87□□□□□ -0.67
COL5A1-208ENST00000618395 Q6ZPA2 131 aa10.87□□□□□ -0.67
COL5A1-208ENST00000618395 MRGPRG-AS1Q2M3A8 158 aa10.87□□□□□ -0.67
COL5A1-208ENST00000618395 LELP1Q5T871 98 aa10.86□□□□□ -0.67
COL5A1-208ENST00000618395 SPTBN4Q9H254 2564 aa10.86□□□□□ -0.67
COL5A1-208ENST00000618395 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.86□□□□□ -0.67
COL5A1-208ENST00000618395 FSTL3O95633 263 aa10.86□□□□□ -0.67
COL5A1-208ENST00000618395 ANKRD11Q6UB99 2663 aaPredicted RBP10.86□□□□□ -0.67
COL5A1-208ENST00000618395 AMELXQ99217 191 aa10.86□□□□□ -0.67
COL5A1-208ENST00000618395 USP9XQ93008 2570 aaPredicted RBP10.86□□□□□ -0.67
COL5A1-208ENST00000618395 NCOR2Q9Y618 2525 aa10.85□□□□□ -0.67
COL5A1-208ENST00000618395 WIPF1O43516 503 aa10.85□□□□□ -0.67
COL5A1-208ENST00000618395 ZNF702PQ9H963 129 aa10.85□□□□□ -0.67
COL5A1-208ENST00000618395 TM2D3Q9BRN9 247 aa10.85□□□□□ -0.67
COL5A1-208ENST00000618395 CIRBP-AS1Q8TBR5 109 aa10.85□□□□□ -0.67
COL5A1-208ENST00000618395 PRR15Q8IV56 129 aa10.84□□□□□ -0.67
COL5A1-208ENST00000618395 Q9BRP9 147 aa10.84□□□□□ -0.67
COL5A1-208ENST00000618395 DNAH12Q6ZR08 3092 aa10.84□□□□□ -0.67
COL5A1-208ENST00000618395 A0A1B0GW54 56 aa10.84□□□□□ -0.67
COL5A1-208ENST00000618395 C11orf21Q9P2W6 132 aa10.83□□□□□ -0.68
COL5A1-208ENST00000618395 ERC2-IT1O76042 136 aa10.83□□□□□ -0.68
COL5A1-208ENST00000618395 PRR9Q5T870 116 aa10.83□□□□□ -0.68
COL5A1-208ENST00000618395 DEFB131BA0A096LNP1 70 aa10.83□□□□□ -0.68
COL5A1-208ENST00000618395 EGFEM1PQ0D2K5 195 aa10.83□□□□□ -0.68
COL5A1-208ENST00000618395 A0A096LNJ9 63 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 A8MUN3 132 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 FSHBP01225 129 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 DEFB114Q30KQ6 69 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 LINC00337Q8N6G1 96 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 LY6G6EA0A0G2JKS1 128 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 UNQ6190/PRO20217Q6UXQ8 127 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 U3KQA8 63 aa10.82□□□□□ -0.68
COL5A1-208ENST00000618395 IGLV8-61A0A075B6I0 122 aa10.81□□□□□ -0.68
COL5A1-208ENST00000618395 MSMPQ1L6U9 139 aa10.81□□□□□ -0.68
COL5A1-208ENST00000618395 TRAV10A0A0B4J240 114 aa10.81□□□□□ -0.68
COL5A1-208ENST00000618395 ZFP36P26651 326 aaKnown RBP10.81□□□□□ -0.68
COL5A1-208ENST00000618395 H3BS24 57 aa10.8□□□□□ -0.68
COL5A1-208ENST00000618395 BBC3Q96PG8 261 aaPredicted RBP10.8□□□□□ -0.68
COL5A1-208ENST00000618395 PSMG3-AS1Q96PY0 264 aa10.8□□□□□ -0.68
COL5A1-208ENST00000618395 SPATA3Q8NHX4 192 aa10.8□□□□□ -0.68
COL5A1-208ENST00000618395 UQCR11O14957 56 aa10.8□□□□□ -0.68
COL5A1-208ENST00000618395 TRAV22A0A0B4J277 110 aa10.79□□□□□ -0.68
COL5A1-208ENST00000618395 IGLV2-18A0A075B6J9 118 aa10.79□□□□□ -0.68
COL5A1-208ENST00000618395 PCNTO95613 3336 aa10.79□□□□□ -0.68
COL5A1-208ENST00000618395 ZNF580Q9UK33 172 aa10.78□□□□□ -0.68
COL5A1-208ENST00000618395 IGKV2D-30A0A075B6S6 120 aa10.78□□□□□ -0.68
COL5A1-208ENST00000618395 ODF3BA8MYP8 253 aa10.78□□□□□ -0.68
COL5A1-208ENST00000618395 IGKV2-30P06310 120 aa10.78□□□□□ -0.68
COL5A1-208ENST00000618395 COL4A3Q01955 1670 aa10.78□□□□□ -0.68
COL5A1-208ENST00000618395 A8MTW9 85 aa10.77□□□□□ -0.69
COL5A1-208ENST00000618395 COL27A1Q8IZC6 1860 aaPredicted RBP10.77□□□□□ -0.69
COL5A1-208ENST00000618395 CHCHD7Q9BUK0 85 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 LINC01548A6NM66 108 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 LOC101927531A0A1B0GV80 90 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 LINC00482Q8N8I6 264 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 PIEZO1Q92508 2521 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 GRNP28799 593 aaKnown RBP10.76□□□□□ -0.69
COL5A1-208ENST00000618395 CRIPTQ9P021 101 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 PLA2G2CQ5R387 149 aa10.76□□□□□ -0.69
COL5A1-208ENST00000618395 USP9YO00507 2555 aaPredicted RBP10.75□□□□□ -0.69
COL5A1-208ENST00000618395 LOC110117498A0A087WWA1 95 aa10.75□□□□□ -0.69
COL5A1-208ENST00000618395 C1orf229Q6ZS94 237 aaPredicted RBP10.74□□□□□ -0.69
COL5A1-208ENST00000618395 KLKP1Q107X0 134 aa10.74□□□□□ -0.69
COL5A1-208ENST00000618395 Q6ZQT0 140 aa10.73□□□□□ -0.69
COL5A1-208ENST00000618395 IGF2RP11717 2491 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms