RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 TRAV8-3A0A0A6YYJ7 113 aa5.76□□□□□ -1.49
TRIM28-214ENST00000600840 LINC00959A0A1B0GUT2 108 aa5.76□□□□□ -1.49
TRIM28-214ENST00000600840 AMMECR1LQ6DCA0 310 aa5.76□□□□□ -1.49
TRIM28-214ENST00000600840 FAM19A3Q7Z5A8 133 aa5.76□□□□□ -1.49
TRIM28-214ENST00000600840 PCP2Q8IVA1 136 aa5.76□□□□□ -1.49
TRIM28-214ENST00000600840 TRAV8-4A0A0B4J246 113 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 WFDC2Q14508 124 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 MIAQ16674 131 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 RNASE13Q5GAN3 156 aaKnown RBP5.75□□□□□ -1.49
TRIM28-214ENST00000600840 LYRM7Q5U5X0 104 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 TMEM101Q96IK0 257 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 CST9LQ9H4G1 147 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 FAM30AQ9NZY2 134 aa5.75□□□□□ -1.49
TRIM28-214ENST00000600840 IGKV2D-26A0A0A0MRZ7 120 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 GAGE10A6NGK3 116 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 FABP2P12104 132 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 GCSHP23434 173 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 DGAT2L7PQ6IED9 249 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 CLPSL2Q6UWE3 100 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 PLEKHB2Q96CS7 222 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 HIST1H4GQ99525 98 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 Q9HAA7 133 aa5.74□□□□□ -1.49
TRIM28-214ENST00000600840 SPANXB1Q9NS25 103 aaPredicted RBP5.74□□□□□ -1.49
TRIM28-214ENST00000600840 DNAH8Q96JB1 4490 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 A0A1B0GWB2 263 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 K7EP34 96 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 CCL25O15444 150 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 UBE2D1P51668 147 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 COX6A2Q02221 97 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 FOXI1Q12951 378 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 LINC00242Q5T6M2 205 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 VCX2Q9H322 139 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 TP73-AS1Q9UF72 201 aa5.73□□□□□ -1.49
TRIM28-214ENST00000600840 IGLV4-69A0A075B6H9 119 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 IGLV10-54A0A075B6I4 117 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 IGHV3OR16-9A0A0B4J2B5 98 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 A0A1W2PPM0 123 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 ZNF815PA8K554 130 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 FAM229AH3BQW9 127 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 LEPROTO15243 131 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 SERTAD4-AS1Q5TG53 156 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 SCGB1D4Q6XE38 83 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 CHCHD10Q8WYQ3 142 aaPredicted RBP5.72□□□□□ -1.49
TRIM28-214ENST00000600840 PLA2G2DQ9UNK4 145 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 CBY1Q9Y3M2 126 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 VPS13BQ7Z7G8 4022 aa5.72□□□□□ -1.49
TRIM28-214ENST00000600840 IGKV2D-24A0A075B6R9 120 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 IGLV5-52A0A0A0MRZ9 124 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 TRAV13-1A0A0B4J241 112 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 IGKV3OR2-268A0A0C4DH90 116 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 GAGE12HA6NDE8 117 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 KRTAP29-1A8MX34 341 aaPredicted RBP5.71□□□□□ -1.5
TRIM28-214ENST00000600840 K7ERU9 68 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 LECT2O14960 151 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 PSCAO43653 123 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 CRPP02741 224 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 LGALS3P17931 250 aaKnown RBP5.71□□□□□ -1.5
TRIM28-214ENST00000600840 TMEM170BQ5T4T1 132 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 CD164L2Q6UWJ8 174 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 Q6ZVH6 145 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 Q8N814 137 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 C1orf43Q9BWL3 253 aa5.71□□□□□ -1.5
TRIM28-214ENST00000600840 SRRM2Q9UQ35 2752 aaKnown RBP5.71□□□□□ -1.5
TRIM28-214ENST00000600840 IGLV5-45A0A087WSX0 123 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 A0A0J9YXV3 536 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 TMEM223A0PJW6 202 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 H3BUT2 72 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 FXYD2P54710 66 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 SS18Q15532 418 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 RMI2Q96E14 147 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 SPCS1Q9Y6A9 102 aa5.7□□□□□ -1.5
TRIM28-214ENST00000600840 TINCRA0A1B0GVN0 87 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 TMEM238C9JI98 176 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 J3QQQ9 107 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 XCL1P47992 114 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 SRSF9Q13242 221 aaKnown RBP eCLIP5.69□□□□□ -1.5
TRIM28-214ENST00000600840 LINC01620Q4KN68 170 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 C15orf56Q8N910 161 aa5.69□□□□□ -1.5
TRIM28-214ENST00000600840 NHP2Q9NX24 153 aaKnown RBP5.69□□□□□ -1.5
TRIM28-214ENST00000600840 HMCN2Q8NDA2 5059 aa5.68□□□□□ -1.5
TRIM28-214ENST00000600840 A0A087WZ39 114 aa5.68□□□□□ -1.5
TRIM28-214ENST00000600840 SLPIP03973 132 aa5.68□□□□□ -1.5
TRIM28-214ENST00000600840 NTN5Q8WTR8 489 aaPredicted RBP5.68□□□□□ -1.5
TRIM28-214ENST00000600840 COPS9Q8WXC6 57 aa5.68□□□□□ -1.5
TRIM28-214ENST00000600840 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.67□□□□□ -1.5
TRIM28-214ENST00000600840 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.67□□□□□ -1.5
TRIM28-214ENST00000600840 USP17L23D6RBM5 183 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 F8W1H4 67 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 ZNF22P17026 224 aaPredicted RBP5.67□□□□□ -1.5
TRIM28-214ENST00000600840 RPL24P83731 157 aaKnown RBP5.67□□□□□ -1.5
TRIM28-214ENST00000600840 KIAA0087Q14695 138 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 C5orf38Q86SI9 138 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 LINC01561Q8N1V8 128 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 RAB37Q96AX2 223 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 CDKN2A-AS1Q9UH64 79 aa5.67□□□□□ -1.5
TRIM28-214ENST00000600840 TRBV20-1A0A075B6N2 111 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 IGHV3-64A0A075B6Q5 118 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 J3QR89 54 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 TIMM17BO60830 172 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 HERVK_113P63121 156 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms