RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 PDZD11Q5EBL8 140 aa10.18□□□□□ -0.78
LSM4-206ENST00000600289 C6orf48Q9UBA6 75 aa10.18□□□□□ -0.78
LSM4-206ENST00000600289 C10orf25Q5T742 122 aa10.17□□□□□ -0.78
LSM4-206ENST00000600289 UNQ6190/PRO20217Q6UXQ8 127 aa10.17□□□□□ -0.78
LSM4-206ENST00000600289 CHCHD1Q96BP2 118 aaKnown RBP10.17□□□□□ -0.78
LSM4-206ENST00000600289 GAGE2BQ13066 116 aa10.16□□□□□ -0.78
LSM4-206ENST00000600289 C7orf33Q8WU49 177 aa10.16□□□□□ -0.78
LSM4-206ENST00000600289 PACRGQ96M98 296 aaPredicted RBP10.16□□□□□ -0.78
LSM4-206ENST00000600289 ATP5LO75964 103 aa10.15□□□□□ -0.78
LSM4-206ENST00000600289 RPL18AQ02543 176 aaKnown RBP10.15□□□□□ -0.78
LSM4-206ENST00000600289 LINC00469Q8N7U9 141 aa10.15□□□□□ -0.78
LSM4-206ENST00000600289 SMIM1B2RUZ4 78 aa10.14□□□□□ -0.79
LSM4-206ENST00000600289 PRSS2P07478 247 aa10.14□□□□□ -0.79
LSM4-206ENST00000600289 IGLC3P0DOY3 106 aa10.14□□□□□ -0.79
LSM4-206ENST00000600289 CXCL5P42830 114 aa10.13□□□□□ -0.79
LSM4-206ENST00000600289 PMCHL1Q16048 86 aa10.13□□□□□ -0.79
LSM4-206ENST00000600289 C2orf82Q6UX34 121 aa10.13□□□□□ -0.79
LSM4-206ENST00000600289 COLCA2A8K830 154 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 NDUFC2-KCTD14E9PQ53 114 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 TRGC2P03986 189 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 CKS1BP61024 79 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 C6orf226Q5I0X4 101 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 Q6ZRP5 223 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 TOMM7Q9P0U1 55 aa10.12□□□□□ -0.79
LSM4-206ENST00000600289 A0A1W2PNN7 141 aa10.1□□□□□ -0.79
LSM4-206ENST00000600289 F8VRH5 84 aa10.1□□□□□ -0.79
LSM4-206ENST00000600289 H3BRM9 83 aa10.1□□□□□ -0.79
LSM4-206ENST00000600289 C9orf116Q5BN46 136 aaPredicted RBP10.1□□□□□ -0.79
LSM4-206ENST00000600289 HNRNPA3P51991 378 aaKnown RBP10.09□□□□□ -0.79
LSM4-206ENST00000600289 COX7B2Q8TF08 81 aa10.09□□□□□ -0.79
LSM4-206ENST00000600289 HSBP1O75506 76 aa10.08□□□□□ -0.8
LSM4-206ENST00000600289 ZNF22P17026 224 aaPredicted RBP10.08□□□□□ -0.8
LSM4-206ENST00000600289 PRR3P79522 188 aaKnown RBP10.08□□□□□ -0.8
LSM4-206ENST00000600289 BAGE3Q86Y29 109 aa10.08□□□□□ -0.8
LSM4-206ENST00000600289 TRAV12-1A0A0B4J245 112 aa10.07□□□□□ -0.8
LSM4-206ENST00000600289 IGLV5-39A0A0G2JS06 123 aa10.07□□□□□ -0.8
LSM4-206ENST00000600289 SPINK8P0C7L1 97 aa10.07□□□□□ -0.8
LSM4-206ENST00000600289 NDUFA6P56556 154 aa10.07□□□□□ -0.8
LSM4-206ENST00000600289 LINC00310P59036 64 aa10.06□□□□□ -0.8
LSM4-206ENST00000600289 IFI27L1Q96BM0 104 aa10.06□□□□□ -0.8
LSM4-206ENST00000600289 OXTP01178 125 aa10.05□□□□□ -0.8
LSM4-206ENST00000600289 ODF1Q14990 250 aa10.05□□□□□ -0.8
LSM4-206ENST00000600289 GAGE2EQ4V326 116 aa10.05□□□□□ -0.8
LSM4-206ENST00000600289 GAGE2DQ9UEU5 116 aa10.05□□□□□ -0.8
LSM4-206ENST00000600289 C11orf86A6NJI1 115 aa10.04□□□□□ -0.8
LSM4-206ENST00000600289 C9orf129Q5T035 196 aaKnown RBP10.04□□□□□ -0.8
LSM4-206ENST00000600289 CHTOPQ9Y3Y2 248 aaKnown RBP10.04□□□□□ -0.8
LSM4-206ENST00000600289 SERF1AO75920 110 aa10.03□□□□□ -0.8
LSM4-206ENST00000600289 FAM19A2Q8N3H0 131 aa10.03□□□□□ -0.8
LSM4-206ENST00000600289 FAM168BA1KXE4 195 aa10.02□□□□□ -0.81
LSM4-206ENST00000600289 KRTAP7-1Q8IUC3 87 aa10.02□□□□□ -0.81
LSM4-206ENST00000600289 PHF5AQ7RTV0 110 aaKnown RBP10.01□□□□□ -0.81
LSM4-206ENST00000600289 KRTAP9-2Q9BYQ4 174 aa10.01□□□□□ -0.81
LSM4-206ENST00000600289 SCO1O75880 301 aa10□□□□□ -0.81
LSM4-206ENST00000600289 LEPROTL1O95214 131 aa10□□□□□ -0.81
LSM4-206ENST00000600289 SFTA2Q6UW10 78 aa10□□□□□ -0.81
LSM4-206ENST00000600289 FAM19A5Q7Z5A7 132 aaPredicted RBP10□□□□□ -0.81
LSM4-206ENST00000600289 TMEM170BQ5T4T1 132 aa9.99□□□□□ -0.81
LSM4-206ENST00000600289 PSORS1C2Q9UIG4 136 aa9.99□□□□□ -0.81
LSM4-206ENST00000600289 M0QXV9 152 aa9.98□□□□□ -0.81
LSM4-206ENST00000600289 NUPR1O60356 82 aa9.98□□□□□ -0.81
LSM4-206ENST00000600289 SPINK6Q6UWN8 80 aa9.98□□□□□ -0.81
LSM4-206ENST00000600289 TNXBP22105 4242 aa9.97□□□□□ -0.81
LSM4-206ENST00000600289 TMEM223A0PJW6 202 aa9.97□□□□□ -0.81
LSM4-206ENST00000600289 SRSF9Q13242 221 aaKnown RBP eCLIP9.97□□□□□ -0.81
LSM4-206ENST00000600289 HSPB8Q9UJY1 196 aa9.97□□□□□ -0.81
LSM4-206ENST00000600289 HIST1H2BKO60814 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BJP06899 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BOP23527 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BBP33778 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BDP58876 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BCP62807 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST2H2BEQ16778 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BHQ93079 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BNQ99877 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 HIST1H2BMQ99879 126 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 XAGE1AQ9HD64 81 aa9.96□□□□□ -0.82
LSM4-206ENST00000600289 COX17Q14061 63 aa9.95□□□□□ -0.82
LSM4-206ENST00000600289 ZNF625Q96I27 306 aaPredicted RBP9.95□□□□□ -0.82
LSM4-206ENST00000600289 TP73-AS1Q9UF72 201 aa9.95□□□□□ -0.82
LSM4-206ENST00000600289 KRTAP11-1Q8IUC1 163 aa9.94□□□□□ -0.82
LSM4-206ENST00000600289 KRTAP9-6A0A140TA67 174 aa9.93□□□□□ -0.82
LSM4-206ENST00000600289 ERG28Q9UKR5 140 aa9.93□□□□□ -0.82
LSM4-206ENST00000600289 C22orf24Q9Y442 160 aa9.93□□□□□ -0.82
LSM4-206ENST00000600289 IGLV5-37A0A075B6J1 123 aa9.92□□□□□ -0.82
LSM4-206ENST00000600289 PLNP26678 52 aa9.92□□□□□ -0.82
LSM4-206ENST00000600289 LBHQ53QV2 105 aaPredicted RBP9.92□□□□□ -0.82
LSM4-206ENST00000600289 C1orf137Q5JT78 98 aa9.92□□□□□ -0.82
LSM4-206ENST00000600289 UBE2BP63146 152 aa9.91□□□□□ -0.82
LSM4-206ENST00000600289 IGLV7-43P04211 117 aa9.9□□□□□ -0.82
LSM4-206ENST00000600289 MT1HL1P0DM35 61 aa9.9□□□□□ -0.82
LSM4-206ENST00000600289 FABP4P15090 132 aa9.9□□□□□ -0.82
LSM4-206ENST00000600289 H0Y8G0 127 aa9.89□□□□□ -0.83
LSM4-206ENST00000600289 PFN2P35080 140 aa9.89□□□□□ -0.83
LSM4-206ENST00000600289 COA6Q5JTJ3 125 aaKnown RBP9.89□□□□□ -0.83
LSM4-206ENST00000600289 REG3GQ6UW15 175 aa9.89□□□□□ -0.83
LSM4-206ENST00000600289 MRPL55Q7Z7F7 128 aaKnown RBP9.89□□□□□ -0.83
LSM4-206ENST00000600289 LINC01600Q96MT4 127 aa9.89□□□□□ -0.83
LSM4-206ENST00000600289 MAP1LC3CQ9BXW4 147 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms