RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 RHEBQ15382 184 aa7.57□□□□□ -1.2
TRIM28-212ENST00000597995 GAGE2EQ4V326 116 aa7.57□□□□□ -1.2
TRIM28-212ENST00000597995 GAGE2DQ9UEU5 116 aa7.57□□□□□ -1.2
TRIM28-212ENST00000597995 TRBV30A0A0K0K1B3 111 aa7.56□□□□□ -1.2
TRIM28-212ENST00000597995 APOC3P02656 99 aa7.56□□□□□ -1.2
TRIM28-212ENST00000597995 PAPPA-AS1Q5QFB9 102 aa7.56□□□□□ -1.2
TRIM28-212ENST00000597995 CDKN2A-AS1Q9UH64 79 aa7.56□□□□□ -1.2
TRIM28-212ENST00000597995 LINC01549A6NIU2 74 aa7.55□□□□□ -1.2
TRIM28-212ENST00000597995 COX19Q49B96 90 aa7.55□□□□□ -1.2
TRIM28-212ENST00000597995 C9orf129Q5T035 196 aaKnown RBP7.55□□□□□ -1.2
TRIM28-212ENST00000597995 ERASQ7Z444 233 aa7.55□□□□□ -1.2
TRIM28-212ENST00000597995 SCGB3A1Q96QR1 104 aa7.55□□□□□ -1.2
TRIM28-212ENST00000597995 MRPL18Q9H0U6 180 aaKnown RBP7.55□□□□□ -1.2
TRIM28-212ENST00000597995 SMCO4Q9NRQ5 59 aa7.55□□□□□ -1.2
TRIM28-212ENST00000597995 HERVK_113P63121 156 aa7.54□□□□□ -1.2
TRIM28-212ENST00000597995 SEC11AP67812 179 aa7.54□□□□□ -1.2
TRIM28-212ENST00000597995 FABP9Q0Z7S8 132 aa7.54□□□□□ -1.2
TRIM28-212ENST00000597995 FAM19A5Q7Z5A7 132 aaPredicted RBP7.54□□□□□ -1.2
TRIM28-212ENST00000597995 Q8IZM0 81 aa7.54□□□□□ -1.2
TRIM28-212ENST00000597995 TOMM7Q9P0U1 55 aa7.54□□□□□ -1.2
TRIM28-212ENST00000597995 NDUFC2-KCTD14E9PQ53 114 aa7.53□□□□□ -1.2
TRIM28-212ENST00000597995 SNAPINO95295 136 aa7.53□□□□□ -1.2
TRIM28-212ENST00000597995 KRTAP1-4P0C5Y4 121 aa7.53□□□□□ -1.2
TRIM28-212ENST00000597995 FA2HQ7L5A8 372 aa7.53□□□□□ -1.2
TRIM28-212ENST00000597995 URB1-AS1Q96HZ7 61 aa7.53□□□□□ -1.2
TRIM28-212ENST00000597995 PACRGQ96M98 296 aaPredicted RBP7.53□□□□□ -1.2
TRIM28-212ENST00000597995 IGLV5-45A0A087WSX0 123 aa7.52□□□□□ -1.21
TRIM28-212ENST00000597995 C6orf226Q5I0X4 101 aa7.52□□□□□ -1.21
TRIM28-212ENST00000597995 SVBPQ8N300 66 aa7.52□□□□□ -1.21
TRIM28-212ENST00000597995 CST9LQ9H4G1 147 aa7.52□□□□□ -1.21
TRIM28-212ENST00000597995 GEMIN7Q9H840 131 aaKnown RBP7.52□□□□□ -1.21
TRIM28-212ENST00000597995 A0A096LNJ9 63 aa7.51□□□□□ -1.21
TRIM28-212ENST00000597995 TINCRA0A1B0GVN0 87 aa7.51□□□□□ -1.21
TRIM28-212ENST00000597995 SMIM1B2RUZ4 78 aa7.51□□□□□ -1.21
TRIM28-212ENST00000597995 PRSS2P07478 247 aa7.51□□□□□ -1.21
TRIM28-212ENST00000597995 RPL13AP40429 203 aaKnown RBP7.51□□□□□ -1.21
TRIM28-212ENST00000597995 CKS1BP61024 79 aa7.51□□□□□ -1.21
TRIM28-212ENST00000597995 M0QXV9 152 aa7.5□□□□□ -1.21
TRIM28-212ENST00000597995 LINC00469Q8N7U9 141 aa7.5□□□□□ -1.21
TRIM28-212ENST00000597995 TRAPPC1Q9Y5R8 145 aa7.5□□□□□ -1.21
TRIM28-212ENST00000597995 UBE2BP63146 152 aa7.49□□□□□ -1.21
TRIM28-212ENST00000597995 PRR4Q16378 134 aa7.49□□□□□ -1.21
TRIM28-212ENST00000597995 C18orf32Q8TCD1 76 aa7.49□□□□□ -1.21
TRIM28-212ENST00000597995 F8VRH5 84 aa7.48□□□□□ -1.21
TRIM28-212ENST00000597995 PMVKQ15126 192 aa7.48□□□□□ -1.21
TRIM28-212ENST00000597995 PDZD11Q5EBL8 140 aa7.48□□□□□ -1.21
TRIM28-212ENST00000597995 XAGE1AQ9HD64 81 aa7.48□□□□□ -1.21
TRIM28-212ENST00000597995 A0A0U1RQV1 116 aa7.47□□□□□ -1.21
TRIM28-212ENST00000597995 SPINK8P0C7L1 97 aa7.47□□□□□ -1.21
TRIM28-212ENST00000597995 COX7B2Q8TF08 81 aa7.47□□□□□ -1.21
TRIM28-212ENST00000597995 YPEL4Q96NS1 127 aa7.47□□□□□ -1.21
TRIM28-212ENST00000597995 LINC00614P0C842 121 aa7.46□□□□□ -1.22
TRIM28-212ENST00000597995 CXCL5P42830 114 aa7.46□□□□□ -1.22
TRIM28-212ENST00000597995 NDUFA6P56556 154 aa7.46□□□□□ -1.22
TRIM28-212ENST00000597995 PMCHL1Q16048 86 aa7.46□□□□□ -1.22
TRIM28-212ENST00000597995 C22orf24Q9Y442 160 aa7.46□□□□□ -1.22
TRIM28-212ENST00000597995 ZNF861PO60384 105 aa7.45□□□□□ -1.22
TRIM28-212ENST00000597995 IGLC3P0DOY3 106 aa7.45□□□□□ -1.22
TRIM28-212ENST00000597995 MUC2Q02817 5179 aa7.44□□□□□ -1.22
TRIM28-212ENST00000597995 IGLV5-39A0A0G2JS06 123 aa7.43□□□□□ -1.22
TRIM28-212ENST00000597995 NUPR1O60356 82 aa7.43□□□□□ -1.22
TRIM28-212ENST00000597995 ZNF22P17026 224 aaPredicted RBP7.43□□□□□ -1.22
TRIM28-212ENST00000597995 RAB5BP61020 215 aa7.43□□□□□ -1.22
TRIM28-212ENST00000597995 HBDP02042 147 aa7.42□□□□□ -1.22
TRIM28-212ENST00000597995 LBHQ53QV2 105 aaPredicted RBP7.41□□□□□ -1.22
TRIM28-212ENST00000597995 TP73-AS1Q9UF72 201 aa7.41□□□□□ -1.22
TRIM28-212ENST00000597995 C11orf86A6NJI1 115 aa7.4□□□□□ -1.22
TRIM28-212ENST00000597995 H3BRM9 83 aa7.4□□□□□ -1.22
TRIM28-212ENST00000597995 MRPL55Q7Z7F7 128 aaKnown RBP7.4□□□□□ -1.22
TRIM28-212ENST00000597995 KRTAP9-2Q9BYQ4 174 aa7.4□□□□□ -1.22
TRIM28-212ENST00000597995 TSPAN13O95857 204 aa7.39□□□□□ -1.23
TRIM28-212ENST00000597995 BAGE3Q86Y29 109 aa7.39□□□□□ -1.23
TRIM28-212ENST00000597995 CBLN2Q8IUK8 224 aa7.39□□□□□ -1.23
TRIM28-212ENST00000597995 LINC00167Q96N53 147 aa7.39□□□□□ -1.23
TRIM28-212ENST00000597995 IGLV5-37A0A075B6J1 123 aa7.38□□□□□ -1.23
TRIM28-212ENST00000597995 ATP5LO75964 103 aa7.38□□□□□ -1.23
TRIM28-212ENST00000597995 RPL37AP8A6NKH3 93 aa7.37□□□□□ -1.23
TRIM28-212ENST00000597995 RPL28P46779 137 aaKnown RBP7.37□□□□□ -1.23
TRIM28-212ENST00000597995 SLC7A5P1Q8MH63 180 aa7.37□□□□□ -1.23
TRIM28-212ENST00000597995 A0A087X002 238 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 GAGE10A6NGK3 116 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 SCO1O75880 301 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 CRYGAP11844 174 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 PFN2P35080 140 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 LCE2AQ5TA79 106 aaPredicted RBP7.36□□□□□ -1.23
TRIM28-212ENST00000597995 TYMSOSQ8TAI1 123 aa7.36□□□□□ -1.23
TRIM28-212ENST00000597995 BCE1O60756 84 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 HSBP1O75506 76 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 TMEM170BQ5T4T1 132 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 SFTA2Q6UW10 78 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 Q8NDZ9 215 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 CHCHD1Q96BP2 118 aaKnown RBP7.35□□□□□ -1.23
TRIM28-212ENST00000597995 ZNF625Q96I27 306 aaPredicted RBP7.35□□□□□ -1.23
TRIM28-212ENST00000597995 ERG28Q9UKR5 140 aa7.35□□□□□ -1.23
TRIM28-212ENST00000597995 CHTOPQ9Y3Y2 248 aaKnown RBP7.35□□□□□ -1.23
TRIM28-212ENST00000597995 IFI27L1Q96BM0 104 aa7.34□□□□□ -1.23
TRIM28-212ENST00000597995 SND1-IT1Q9HBX3 110 aa7.34□□□□□ -1.23
TRIM28-212ENST00000597995 TRAV12-1A0A0B4J245 112 aa7.33□□□□□ -1.24
TRIM28-212ENST00000597995 VPREB1P12018 145 aa7.33□□□□□ -1.24
TRIM28-212ENST00000597995 LINC00310P59036 64 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms