RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 C7orf33Q8WU49 177 aa10.94□□□□□ -0.66
SHKBP1-212ENST00000596163 VPS13BQ7Z7G8 4022 aa10.94□□□□□ -0.66
SHKBP1-212ENST00000596163 TLX1NBP0CAT3 122 aa10.93□□□□□ -0.66
SHKBP1-212ENST00000596163 C10orf25Q5T742 122 aa10.93□□□□□ -0.66
SHKBP1-212ENST00000596163 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
SHKBP1-212ENST00000596163 CXCL5P42830 114 aa10.92□□□□□ -0.66
SHKBP1-212ENST00000596163 C2orf82Q6UX34 121 aa10.92□□□□□ -0.66
SHKBP1-212ENST00000596163 IGLC3P0DOY3 106 aa10.91□□□□□ -0.66
SHKBP1-212ENST00000596163 SMIM1B2RUZ4 78 aa10.9□□□□□ -0.66
SHKBP1-212ENST00000596163 COX7B2Q8TF08 81 aa10.9□□□□□ -0.66
SHKBP1-212ENST00000596163 IFI27L1Q96BM0 104 aa10.89□□□□□ -0.67
SHKBP1-212ENST00000596163 TRAV12-1A0A0B4J245 112 aa10.88□□□□□ -0.67
SHKBP1-212ENST00000596163 NDUFC2-KCTD14E9PQ53 114 aa10.88□□□□□ -0.67
SHKBP1-212ENST00000596163 F8VRH5 84 aa10.88□□□□□ -0.67
SHKBP1-212ENST00000596163 SPINK8P0C7L1 97 aa10.88□□□□□ -0.67
SHKBP1-212ENST00000596163 CHTOPQ9Y3Y2 248 aaKnown RBP10.88□□□□□ -0.67
SHKBP1-212ENST00000596163 SRRM2Q9UQ35 2752 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 SCO1O75880 301 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 SERF1AO75920 110 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 GAGE2EQ4V326 116 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 Q6ZRP5 223 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 FAM19A2Q8N3H0 131 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 GAGE2DQ9UEU5 116 aa10.87□□□□□ -0.67
SHKBP1-212ENST00000596163 KRTAP10-4P60372 401 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-212ENST00000596163 C9orf116Q5BN46 136 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-212ENST00000596163 LEPROTL1O95214 131 aa10.85□□□□□ -0.67
SHKBP1-212ENST00000596163 ZNF22P17026 224 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-212ENST00000596163 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
SHKBP1-212ENST00000596163 TMEM170BQ5T4T1 132 aa10.84□□□□□ -0.67
SHKBP1-212ENST00000596163 C11orf86A6NJI1 115 aa10.83□□□□□ -0.68
SHKBP1-212ENST00000596163 HSPB8Q9UJY1 196 aa10.83□□□□□ -0.68
SHKBP1-212ENST00000596163 IGLV5-39A0A0G2JS06 123 aa10.82□□□□□ -0.68
SHKBP1-212ENST00000596163 LINC00310P59036 64 aa10.81□□□□□ -0.68
SHKBP1-212ENST00000596163 SFTA2Q6UW10 78 aa10.8□□□□□ -0.68
SHKBP1-212ENST00000596163 S100A1P23297 94 aa10.79□□□□□ -0.68
SHKBP1-212ENST00000596163 NUPR1O60356 82 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BKO60814 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BJP06899 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 FABP4P15090 132 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BOP23527 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BBP33778 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BDP58876 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BCP62807 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST2H2BEQ16778 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BHQ93079 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BNQ99877 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 HIST1H2BMQ99879 126 aa10.78□□□□□ -0.68
SHKBP1-212ENST00000596163 H0Y8G0 127 aa10.77□□□□□ -0.69
SHKBP1-212ENST00000596163 PRR3P79522 188 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-212ENST00000596163 C9orf129Q5T035 196 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-212ENST00000596163 FAM19A5Q7Z5A7 132 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-212ENST00000596163 TMEM223A0PJW6 202 aa10.76□□□□□ -0.69
SHKBP1-212ENST00000596163 FAM168BA1KXE4 195 aa10.76□□□□□ -0.69
SHKBP1-212ENST00000596163 ODF1Q14990 250 aa10.76□□□□□ -0.69
SHKBP1-212ENST00000596163 PHF5AQ7RTV0 110 aaKnown RBP10.76□□□□□ -0.69
SHKBP1-212ENST00000596163 MAP1LC3CQ9BXW4 147 aa10.75□□□□□ -0.69
SHKBP1-212ENST00000596163 XAGE1AQ9HD64 81 aa10.75□□□□□ -0.69
SHKBP1-212ENST00000596163 FLG2Q5D862 2391 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 KRTAP29-1A8MX34 341 aaPredicted RBP10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 J3QL48 77 aa10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 M0QXV9 152 aa10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 OXTP01178 125 aa10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 PLNP26678 52 aa10.74□□□□□ -0.69
SHKBP1-212ENST00000596163 HNRNPA3P51991 378 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-212ENST00000596163 COX17Q14061 63 aa10.73□□□□□ -0.69
SHKBP1-212ENST00000596163 UBE2BP63146 152 aa10.72□□□□□ -0.69
SHKBP1-212ENST00000596163 LBHQ53QV2 105 aaPredicted RBP10.72□□□□□ -0.69
SHKBP1-212ENST00000596163 DPM2O94777 84 aa10.71□□□□□ -0.69
SHKBP1-212ENST00000596163 PFN2P35080 140 aa10.71□□□□□ -0.69
SHKBP1-212ENST00000596163 PSORS1C2Q9UIG4 136 aa10.71□□□□□ -0.69
SHKBP1-212ENST00000596163 ERG28Q9UKR5 140 aa10.71□□□□□ -0.69
SHKBP1-212ENST00000596163 SPINK6Q6UWN8 80 aa10.7□□□□□ -0.7
SHKBP1-212ENST00000596163 KRTAP7-1Q8IUC3 87 aa10.7□□□□□ -0.7
SHKBP1-212ENST00000596163 HERVK_113P61574 105 aa10.69□□□□□ -0.7
SHKBP1-212ENST00000596163 C1orf137Q5JT78 98 aa10.69□□□□□ -0.7
SHKBP1-212ENST00000596163 ZNF625Q96I27 306 aaPredicted RBP10.69□□□□□ -0.7
SHKBP1-212ENST00000596163 PLA2G2DQ9UNK4 145 aa10.69□□□□□ -0.7
SHKBP1-212ENST00000596163 C22orf24Q9Y442 160 aa10.69□□□□□ -0.7
SHKBP1-212ENST00000596163 ATP6V1G1O75348 118 aa10.68□□□□□ -0.7
SHKBP1-212ENST00000596163 IGKCP01834 107 aa10.68□□□□□ -0.7
SHKBP1-212ENST00000596163 COA6Q5JTJ3 125 aaKnown RBP10.68□□□□□ -0.7
SHKBP1-212ENST00000596163 SERTAD4-AS1Q5TG53 156 aa10.68□□□□□ -0.7
SHKBP1-212ENST00000596163 TP73-AS1Q9UF72 201 aa10.68□□□□□ -0.7
SHKBP1-212ENST00000596163 MYCBP2O75592 4640 aa10.67□□□□□ -0.7
SHKBP1-212ENST00000596163 LINC00587B1AMM8 73 aa10.67□□□□□ -0.7
SHKBP1-212ENST00000596163 HERV-K104P63124 156 aa10.67□□□□□ -0.7
SHKBP1-212ENST00000596163 PLEKHB2Q96CS7 222 aa10.67□□□□□ -0.7
SHKBP1-212ENST00000596163 MYMXA0A1B0GTQ4 84 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 SYS1-DBNDD2H3BUS1 97 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 LEPROTO15243 131 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 LINC00158P58513 81 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 SRSF9Q13242 221 aaKnown RBP eCLIP10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 MRPL55Q7Z7F7 128 aaKnown RBP10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 NKAPP1Q8N9T2 125 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 PMCHL2Q9BQD1 86 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 NDUFA12Q9UI09 145 aa10.65□□□□□ -0.7
SHKBP1-212ENST00000596163 PKHD1L1Q86WI1 4243 aa10.64□□□□□ -0.71
SHKBP1-212ENST00000596163 RPL24P83731 157 aaKnown RBP10.64□□□□□ -0.71
SHKBP1-212ENST00000596163 REG3GQ6UW15 175 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms