RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TLX1NBP0CAT3 122 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BOP23527 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BBP33778 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 CXCL5P42830 114 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 PTTG1IPP53801 180 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BDP58876 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BCP62807 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST2H2BEQ16778 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-204ENST00000594806 C10orf25Q5T742 122 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 LINC00528Q8N1L1 170 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BHQ93079 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BNQ99877 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BMQ99879 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 PLAC8Q9NZF1 115 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 KRTAP4-5Q9BYR2 181 aa16.36■□□□□ 0.21
TRIM28-204ENST00000594806 C6orf48Q9UBA6 75 aa16.36■□□□□ 0.21
TRIM28-204ENST00000594806 CHTOPQ9Y3Y2 248 aaKnown RBP16.36■□□□□ 0.21
TRIM28-204ENST00000594806 PLA2G1BP04054 148 aaKnown RBP16.35■□□□□ 0.21
TRIM28-204ENST00000594806 HSPB8Q9UJY1 196 aa16.35■□□□□ 0.21
TRIM28-204ENST00000594806 GAGE2BQ13066 116 aa16.34■□□□□ 0.21
TRIM28-204ENST00000594806 C2orf82Q6UX34 121 aa16.34■□□□□ 0.21
TRIM28-204ENST00000594806 NUPR1O60356 82 aa16.33■□□□□ 0.2
TRIM28-204ENST00000594806 ZNF22P17026 224 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-204ENST00000594806 COX7B2Q8TF08 81 aa16.33■□□□□ 0.2
TRIM28-204ENST00000594806 SPINK8P0C7L1 97 aa16.32■□□□□ 0.2
TRIM28-204ENST00000594806 RPL18AQ02543 176 aaKnown RBP16.32■□□□□ 0.2
TRIM28-204ENST00000594806 STPG4Q8N801 248 aa16.32■□□□□ 0.2
TRIM28-204ENST00000594806 C11orf86A6NJI1 115 aa16.31■□□□□ 0.2
TRIM28-204ENST00000594806 F8VRH5 84 aa16.31■□□□□ 0.2
TRIM28-204ENST00000594806 IGLV5-39A0A0G2JS06 123 aa16.29■□□□□ 0.2
TRIM28-204ENST00000594806 TMEM170BQ5T4T1 132 aa16.29■□□□□ 0.2
TRIM28-204ENST00000594806 FAT1Q14517 4588 aa16.27■□□□□ 0.2
TRIM28-204ENST00000594806 NDUFC2-KCTD14E9PQ53 114 aa16.27■□□□□ 0.2
TRIM28-204ENST00000594806 FABP4P15090 132 aa16.26■□□□□ 0.19
TRIM28-204ENST00000594806 Q6ZRP5 223 aa16.26■□□□□ 0.19
TRIM28-204ENST00000594806 ODF1Q14990 250 aa16.24■□□□□ 0.19
TRIM28-204ENST00000594806 COA6Q5JTJ3 125 aaKnown RBP16.24■□□□□ 0.19
TRIM28-204ENST00000594806 C7orf33Q8WU49 177 aa16.24■□□□□ 0.19
TRIM28-204ENST00000594806 C9orf116Q5BN46 136 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-204ENST00000594806 SFTA2Q6UW10 78 aa16.22■□□□□ 0.19
TRIM28-204ENST00000594806 MAP1LC3CQ9BXW4 147 aa16.22■□□□□ 0.19
TRIM28-204ENST00000594806 H0Y8G0 127 aa16.21■□□□□ 0.19
TRIM28-204ENST00000594806 RPL37AP61513 92 aaKnown RBP16.21■□□□□ 0.19
TRIM28-204ENST00000594806 GAGE2EQ4V326 116 aa16.21■□□□□ 0.19
TRIM28-204ENST00000594806 GAGE2DQ9UEU5 116 aa16.21■□□□□ 0.19
TRIM28-204ENST00000594806 TMEM223A0PJW6 202 aa16.2■□□□□ 0.18
TRIM28-204ENST00000594806 VPS13BQ7Z7G8 4022 aa16.19■□□□□ 0.18
TRIM28-204ENST00000594806 INAFM2P0DMQ5 153 aa16.19■□□□□ 0.18
TRIM28-204ENST00000594806 PLNP26678 52 aa16.19■□□□□ 0.18
TRIM28-204ENST00000594806 A0A1W2PNN7 141 aa16.18■□□□□ 0.18
TRIM28-204ENST00000594806 KRTAP10-4P60372 401 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-204ENST00000594806 DPM2O94777 84 aa16.14■□□□□ 0.17
TRIM28-204ENST00000594806 SYS1-DBNDD2H3BUS1 97 aa16.11■□□□□ 0.17
TRIM28-204ENST00000594806 IGKCP01834 107 aa16.11■□□□□ 0.17
TRIM28-204ENST00000594806 COX17Q14061 63 aa16.11■□□□□ 0.17
TRIM28-204ENST00000594806 C9orf129Q5T035 196 aaKnown RBP16.11■□□□□ 0.17
TRIM28-204ENST00000594806 SRRM2Q9UQ35 2752 aaKnown RBP16.11■□□□□ 0.17
TRIM28-204ENST00000594806 ABCA13Q86UQ4 5058 aa16.1■□□□□ 0.17
TRIM28-204ENST00000594806 ZNF625Q96I27 306 aaPredicted RBP16.09■□□□□ 0.17
TRIM28-204ENST00000594806 HERVK_113P61574 105 aa16.08■□□□□ 0.16
TRIM28-204ENST00000594806 PET117Q6UWS5 81 aa16.08■□□□□ 0.16
TRIM28-204ENST00000594806 FAM168BA1KXE4 195 aa16.07■□□□□ 0.16
TRIM28-204ENST00000594806 ERG28Q9UKR5 140 aa16.07■□□□□ 0.16
TRIM28-204ENST00000594806 FAM19A5Q7Z5A7 132 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-204ENST00000594806 XAGE1AQ9HD64 81 aa16.06■□□□□ 0.16
TRIM28-204ENST00000594806 PCLOQ9Y6V0 5065 aa16.05■□□□□ 0.16
TRIM28-204ENST00000594806 PLEKHB2Q96CS7 222 aa16.05■□□□□ 0.16
TRIM28-204ENST00000594806 PMCHL2Q9BQD1 86 aa16.05■□□□□ 0.16
TRIM28-204ENST00000594806 LEPROTO15243 131 aa16.04■□□□□ 0.16
TRIM28-204ENST00000594806 PFN2P35080 140 aa16.04■□□□□ 0.16
TRIM28-204ENST00000594806 HERV-K104P63124 156 aa16.04■□□□□ 0.16
TRIM28-204ENST00000594806 PRR3P79522 188 aaKnown RBP16.04■□□□□ 0.16
TRIM28-204ENST00000594806 LINC01545Q5VT33 79 aa16.04■□□□□ 0.16
TRIM28-204ENST00000594806 PHF5AQ7RTV0 110 aaKnown RBP16.04■□□□□ 0.16
TRIM28-204ENST00000594806 PLA2G2DQ9UNK4 145 aa16.03■□□□□ 0.16
TRIM28-204ENST00000594806 LINC00587B1AMM8 73 aa16.02■□□□□ 0.16
TRIM28-204ENST00000594806 M0QXV9 152 aa16.02■□□□□ 0.16
TRIM28-204ENST00000594806 KRTAP7-1Q8IUC3 87 aa16.02■□□□□ 0.16
TRIM28-204ENST00000594806 C3orf79P0CE67 100 aa16.01■□□□□ 0.15
TRIM28-204ENST00000594806 FLG2Q5D862 2391 aaPredicted RBP16■□□□□ 0.15
TRIM28-204ENST00000594806 MYMXA0A1B0GTQ4 84 aa16■□□□□ 0.15
TRIM28-204ENST00000594806 TP73-AS1Q9UF72 201 aa16■□□□□ 0.15
TRIM28-204ENST00000594806 NDUFA12Q9UI09 145 aa16■□□□□ 0.15
TRIM28-204ENST00000594806 NMUP48645 174 aa15.98■□□□□ 0.15
TRIM28-204ENST00000594806 LBHQ53QV2 105 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-204ENST00000594806 J3QQQ9 107 aa15.97■□□□□ 0.15
TRIM28-204ENST00000594806 S100A6P06703 90 aa15.97■□□□□ 0.15
TRIM28-204ENST00000594806 KRTDAPP60985 99 aa15.97■□□□□ 0.15
TRIM28-204ENST00000594806 SERTAD4-AS1Q5TG53 156 aa15.97■□□□□ 0.15
TRIM28-204ENST00000594806 C22orf24Q9Y442 160 aa15.97■□□□□ 0.15
TRIM28-204ENST00000594806 C20orf202A1L168 122 aa15.96■□□□□ 0.15
TRIM28-204ENST00000594806 AKR1D1P51857 326 aa15.96■□□□□ 0.15
TRIM28-204ENST00000594806 LINC00158P58513 81 aa15.96■□□□□ 0.15
TRIM28-204ENST00000594806 E9PLD3 99 aa15.95■□□□□ 0.14
TRIM28-204ENST00000594806 LGALS3P17931 250 aaKnown RBP15.95■□□□□ 0.14
TRIM28-204ENST00000594806 SND1-IT1Q9HBX3 110 aa15.95■□□□□ 0.14
TRIM28-204ENST00000594806 PSORS1C2Q9UIG4 136 aa15.95■□□□□ 0.14
TRIM28-204ENST00000594806 IGLV5-37A0A075B6J1 123 aa15.94■□□□□ 0.14
TRIM28-204ENST00000594806 S100A2P29034 98 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms