RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CIRBPQ14011 172 aaKnown RBP10.08□□□□□ -0.8
SS18-215ENST00000580642 SCGB1D4Q6XE38 83 aa10.08□□□□□ -0.8
SS18-215ENST00000580642 LYSTQ99698 3801 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 DNAH6Q9C0G6 4158 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 A0A0J9YXY3 114 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 M0R2N4 97 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 GCSHP23434 173 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 COX17Q14061 63 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 Q6ZVH6 145 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 TTTY13Q9BZ97 58 aa10.07□□□□□ -0.8
SS18-215ENST00000580642 TRBV30A0A0K0K1B3 111 aa10.06□□□□□ -0.8
SS18-215ENST00000580642 RNF151Q2KHN1 245 aa10.06□□□□□ -0.8
SS18-215ENST00000580642 TMEM238C9JI98 176 aa10.05□□□□□ -0.8
SS18-215ENST00000580642 HNRNPA3P51991 378 aaKnown RBP10.05□□□□□ -0.8
SS18-215ENST00000580642 SPANXB1Q9NS25 103 aaPredicted RBP10.05□□□□□ -0.8
SS18-215ENST00000580642 LRCOL1A6NCL2 159 aa10.04□□□□□ -0.8
SS18-215ENST00000580642 DDTP30046 118 aa10.04□□□□□ -0.8
SS18-215ENST00000580642 TAL2Q16559 108 aa10.04□□□□□ -0.8
SS18-215ENST00000580642 CAMK2N2Q96S95 79 aa10.04□□□□□ -0.8
SS18-215ENST00000580642 PPDPFQ9H3Y8 114 aa10.04□□□□□ -0.8
SS18-215ENST00000580642 HIGD2BQ4VC39 106 aa10.03□□□□□ -0.8
SS18-215ENST00000580642 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
SS18-215ENST00000580642 COPS9Q8WXC6 57 aa10.03□□□□□ -0.8
SS18-215ENST00000580642 CNBPP62633 177 aaKnown RBP10.02□□□□□ -0.81
SS18-215ENST00000580642 SYCNQ0VAF6 134 aa10.02□□□□□ -0.81
SS18-215ENST00000580642 C2orf82Q6UX34 121 aa10.02□□□□□ -0.81
SS18-215ENST00000580642 ERG28Q9UKR5 140 aa10.02□□□□□ -0.81
SS18-215ENST00000580642 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.01□□□□□ -0.81
SS18-215ENST00000580642 PTTG1IPP53801 180 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 MEIG1Q5JSS6 88 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 UNQ6190/PRO20217Q6UXQ8 127 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 SPANXDQ9BXN6 97 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 SPANXCQ9NY87 97 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 PKIGQ9Y2B9 76 aa10.01□□□□□ -0.81
SS18-215ENST00000580642 IFITM1P13164 125 aa10□□□□□ -0.81
SS18-215ENST00000580642 HSD52Q0P140 79 aa10□□□□□ -0.81
SS18-215ENST00000580642 LITAFQ99732 161 aa10□□□□□ -0.81
SS18-215ENST00000580642 TP73-AS1Q9UF72 201 aa10□□□□□ -0.81
SS18-215ENST00000580642 A0A087WTM6 91 aa9.99□□□□□ -0.81
SS18-215ENST00000580642 EREGO14944 169 aa9.99□□□□□ -0.81
SS18-215ENST00000580642 CARD19Q96LW7 228 aa9.99□□□□□ -0.81
SS18-215ENST00000580642 TLX1NBP0CAT3 122 aa9.98□□□□□ -0.81
SS18-215ENST00000580642 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
SS18-215ENST00000580642 Q6ZRU5 148 aa9.98□□□□□ -0.81
SS18-215ENST00000580642 Q8N814 137 aa9.98□□□□□ -0.81
SS18-215ENST00000580642 LINC00526Q96FQ7 95 aa9.98□□□□□ -0.81
SS18-215ENST00000580642 C6orf48Q9UBA6 75 aa9.98□□□□□ -0.81
SS18-215ENST00000580642 LECT2O14960 151 aa9.97□□□□□ -0.81
SS18-215ENST00000580642 LINC00158P58513 81 aa9.97□□□□□ -0.81
SS18-215ENST00000580642 WFDC2Q14508 124 aa9.97□□□□□ -0.81
SS18-215ENST00000580642 C10orf25Q5T742 122 aa9.97□□□□□ -0.81
SS18-215ENST00000580642 HIST1H4GQ99525 98 aa9.97□□□□□ -0.81
SS18-215ENST00000580642 LOC107984156A0A0G2JMH3 177 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 NDUFC2-KCTD14E9PQ53 114 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 M0R143 59 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 SMIM13P0DJ93 91 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 ARL17AQ8IVW1 177 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 KMT2AQ03164 3969 aa9.96□□□□□ -0.82
SS18-215ENST00000580642 SACSQ9NZJ4 4579 aa9.95□□□□□ -0.82
SS18-215ENST00000580642 SLPIP03973 132 aa9.95□□□□□ -0.82
SS18-215ENST00000580642 CTAG1AP78358 180 aa9.95□□□□□ -0.82
SS18-215ENST00000580642 ADAMTSL4-AS1Q5T5F5 129 aa9.95□□□□□ -0.82
SS18-215ENST00000580642 RTL8CO15255 209 aa9.94□□□□□ -0.82
SS18-215ENST00000580642 LINC00336Q6ZUF6 198 aa9.94□□□□□ -0.82
SS18-215ENST00000580642 MIR7-3HGQ8N6C7 128 aa9.94□□□□□ -0.82
SS18-215ENST00000580642 DNAH2Q9P225 4427 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 TMEM238LA0A1B0GVL6 79 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 A6NJY4 79 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 PCP4L1A6NKN8 68 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 PFN2P35080 140 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 RPL24P83731 157 aaKnown RBP9.93□□□□□ -0.82
SS18-215ENST00000580642 CEND1Q8N111 149 aa9.93□□□□□ -0.82
SS18-215ENST00000580642 C9orf163Q8N9P6 203 aa9.92□□□□□ -0.82
SS18-215ENST00000580642 LINC00308Q8TCZ7 52 aa9.92□□□□□ -0.82
SS18-215ENST00000580642 LOC107984640A0A0U1RRK4 108 aa9.91□□□□□ -0.82
SS18-215ENST00000580642 C9orf116Q5BN46 136 aaPredicted RBP9.91□□□□□ -0.82
SS18-215ENST00000580642 DNAH10Q8IVF4 4471 aa9.91□□□□□ -0.82
SS18-215ENST00000580642 DNAH17Q9UFH2 4485 aa9.91□□□□□ -0.82
SS18-215ENST00000580642 MUSTN1Q8IVN3 82 aa9.9□□□□□ -0.82
SS18-215ENST00000580642 TNP2Q05952 138 aa9.89□□□□□ -0.83
SS18-215ENST00000580642 BVES-AS1Q5T3Y7 98 aa9.89□□□□□ -0.83
SS18-215ENST00000580642 SND1-IT1Q9HBX3 110 aa9.89□□□□□ -0.83
SS18-215ENST00000580642 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.88□□□□□ -0.83
SS18-215ENST00000580642 A0A0U1RRA0 63 aa9.88□□□□□ -0.83
SS18-215ENST00000580642 NDUFC2O95298 119 aa9.88□□□□□ -0.83
SS18-215ENST00000580642 PGPEP1Q9NXJ5 209 aa9.88□□□□□ -0.83
SS18-215ENST00000580642 HYDINQ4G0P3 5121 aa9.88□□□□□ -0.83
SS18-215ENST00000580642 DAND5Q8N907 189 aa9.87□□□□□ -0.83
SS18-215ENST00000580642 LINC00474Q9P2X8 69 aa9.87□□□□□ -0.83
SS18-215ENST00000580642 A6NDN8 102 aa9.86□□□□□ -0.83
SS18-215ENST00000580642 C16orf90A8MZG2 172 aa9.86□□□□□ -0.83
SS18-215ENST00000580642 Q6ZRP5 223 aa9.86□□□□□ -0.83
SS18-215ENST00000580642 PLA2G2DQ9UNK4 145 aa9.86□□□□□ -0.83
SS18-215ENST00000580642 HINT1P49773 126 aaPredicted RBP9.85□□□□□ -0.83
SS18-215ENST00000580642 SOSTDC1Q6X4U4 206 aa9.85□□□□□ -0.83
SS18-215ENST00000580642 A0A1B0GWB2 263 aa9.84□□□□□ -0.83
SS18-215ENST00000580642 A4D1N5 150 aa9.84□□□□□ -0.83
SS18-215ENST00000580642 FXYD2P54710 66 aa9.84□□□□□ -0.83
SS18-215ENST00000580642 IGLV5-52A0A0A0MRZ9 124 aa9.83□□□□□ -0.84
SS18-215ENST00000580642 A0A0B4J2C4 111 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms