RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GAGE2DQ9UEU5 116 aa12.71□□□□□ -0.37
VPS53-216ENST00000574029 IGLV1-50A0A075B6I6 118 aa12.7□□□□□ -0.38
VPS53-216ENST00000574029 KRTAP1-4P0C5Y4 121 aa12.7□□□□□ -0.38
VPS53-216ENST00000574029 TEX43Q6ZNM6 134 aa12.7□□□□□ -0.38
VPS53-216ENST00000574029 CBLN2Q8IUK8 224 aa12.7□□□□□ -0.38
VPS53-216ENST00000574029 TIMM17AQ99595 171 aa12.7□□□□□ -0.38
VPS53-216ENST00000574029 FA2HQ7L5A8 372 aa12.69□□□□□ -0.38
VPS53-216ENST00000574029 C18orf32Q8TCD1 76 aa12.69□□□□□ -0.38
VPS53-216ENST00000574029 VCX2Q9H322 139 aa12.69□□□□□ -0.38
VPS53-216ENST00000574029 PAPPA-AS1Q5QFB9 102 aa12.68□□□□□ -0.38
VPS53-216ENST00000574029 Q6ZN92 141 aa12.68□□□□□ -0.38
VPS53-216ENST00000574029 ERASQ7Z444 233 aa12.68□□□□□ -0.38
VPS53-216ENST00000574029 M0QXV9 152 aa12.67□□□□□ -0.38
VPS53-216ENST00000574029 LINC00242Q5T6M2 205 aa12.67□□□□□ -0.38
VPS53-216ENST00000574029 LINC00173Q6ZV60 143 aa12.67□□□□□ -0.38
VPS53-216ENST00000574029 TRBV30A0A0K0K1B3 111 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 LINC00614P0C842 121 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 UBE2D1P51668 147 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 FAM19A3Q7Z5A8 133 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 URB1-AS1Q96HZ7 61 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 C2orf88Q9BSF0 95 aa12.66□□□□□ -0.38
VPS53-216ENST00000574029 UBE2BP63146 152 aa12.65□□□□□ -0.38
VPS53-216ENST00000574029 SCGB3A1Q96QR1 104 aa12.65□□□□□ -0.38
VPS53-216ENST00000574029 NDUFC2-KCTD14E9PQ53 114 aa12.64□□□□□ -0.39
VPS53-216ENST00000574029 C9orf129Q5T035 196 aaKnown RBP12.64□□□□□ -0.39
VPS53-216ENST00000574029 ZC2HC1BQ5TFG8 222 aa12.64□□□□□ -0.39
VPS53-216ENST00000574029 C2orf82Q6UX34 121 aa12.64□□□□□ -0.39
VPS53-216ENST00000574029 RAB5BP61020 215 aa12.63□□□□□ -0.39
VPS53-216ENST00000574029 LINC01561Q8N1V8 128 aa12.62□□□□□ -0.39
VPS53-216ENST00000574029 RPL13AP40429 203 aaKnown RBP12.61□□□□□ -0.39
VPS53-216ENST00000574029 PACRGQ96M98 296 aaPredicted RBP12.61□□□□□ -0.39
VPS53-216ENST00000574029 A0A096LNJ9 63 aa12.6□□□□□ -0.39
VPS53-216ENST00000574029 COLCA2A8K830 154 aa12.6□□□□□ -0.39
VPS53-216ENST00000574029 SEC11AP67812 179 aa12.6□□□□□ -0.39
VPS53-216ENST00000574029 TRGC2P03986 189 aa12.57□□□□□ -0.4
VPS53-216ENST00000574029 CST9LQ9H4G1 147 aa12.57□□□□□ -0.4
VPS53-216ENST00000574029 ZNF861PO60384 105 aa12.56□□□□□ -0.4
VPS53-216ENST00000574029 HBDP02042 147 aa12.56□□□□□ -0.4
VPS53-216ENST00000574029 HERVK_113P63121 156 aa12.56□□□□□ -0.4
VPS53-216ENST00000574029 PRR4Q16378 134 aa12.56□□□□□ -0.4
VPS53-216ENST00000574029 PDZD11Q5EBL8 140 aa12.56□□□□□ -0.4
VPS53-216ENST00000574029 CHCHD1Q96BP2 118 aaKnown RBP12.56□□□□□ -0.4
VPS53-216ENST00000574029 PMVKQ15126 192 aa12.55□□□□□ -0.4
VPS53-216ENST00000574029 TINCRA0A1B0GVN0 87 aa12.54□□□□□ -0.4
VPS53-216ENST00000574029 NUPR1O60356 82 aa12.53□□□□□ -0.4
VPS53-216ENST00000574029 PRSS2P07478 247 aa12.53□□□□□ -0.4
VPS53-216ENST00000574029 PMCHL1Q16048 86 aa12.53□□□□□ -0.4
VPS53-216ENST00000574029 GEMIN7Q9H840 131 aaKnown RBP12.53□□□□□ -0.4
VPS53-216ENST00000574029 C22orf24Q9Y442 160 aa12.53□□□□□ -0.4
VPS53-216ENST00000574029 CKS1BP61024 79 aa12.52□□□□□ -0.41
VPS53-216ENST00000574029 TOMM7Q9P0U1 55 aa12.52□□□□□ -0.41
VPS53-216ENST00000574029 CDKN2A-AS1Q9UH64 79 aa12.52□□□□□ -0.41
VPS53-216ENST00000574029 IGLV5-45A0A087WSX0 123 aa12.51□□□□□ -0.41
VPS53-216ENST00000574029 ATP5LO75964 103 aa12.51□□□□□ -0.41
VPS53-216ENST00000574029 C6orf226Q5I0X4 101 aa12.51□□□□□ -0.41
VPS53-216ENST00000574029 Q8IZM0 81 aa12.51□□□□□ -0.41
VPS53-216ENST00000574029 LINC00469Q8N7U9 141 aa12.51□□□□□ -0.41
VPS53-216ENST00000574029 LBHQ53QV2 105 aaPredicted RBP12.5□□□□□ -0.41
VPS53-216ENST00000574029 SCO1O75880 301 aa12.49□□□□□ -0.41
VPS53-216ENST00000574029 BAGE3Q86Y29 109 aa12.49□□□□□ -0.41
VPS53-216ENST00000574029 XAGE1AQ9HD64 81 aa12.49□□□□□ -0.41
VPS53-216ENST00000574029 KRTAP9-2Q9BYQ4 174 aa12.47□□□□□ -0.41
VPS53-216ENST00000574029 TP73-AS1Q9UF72 201 aa12.47□□□□□ -0.41
VPS53-216ENST00000574029 IGLC3P0DOY3 106 aa12.46□□□□□ -0.41
VPS53-216ENST00000574029 HSBP1O75506 76 aa12.45□□□□□ -0.42
VPS53-216ENST00000574029 NDUFA6P56556 154 aa12.45□□□□□ -0.42
VPS53-216ENST00000574029 SMIM1B2RUZ4 78 aa12.44□□□□□ -0.42
VPS53-216ENST00000574029 F8VRH5 84 aa12.44□□□□□ -0.42
VPS53-216ENST00000574029 LINC00310P59036 64 aa12.44□□□□□ -0.42
VPS53-216ENST00000574029 MRPL55Q7Z7F7 128 aaKnown RBP12.44□□□□□ -0.42
VPS53-216ENST00000574029 MUC2Q02817 5179 aa12.43□□□□□ -0.42
VPS53-216ENST00000574029 A0A087X002 238 aa12.43□□□□□ -0.42
VPS53-216ENST00000574029 TSPAN13O95857 204 aa12.43□□□□□ -0.42
VPS53-216ENST00000574029 BCE1O60756 84 aa12.42□□□□□ -0.42
VPS53-216ENST00000574029 SERF1AO75920 110 aa12.42□□□□□ -0.42
VPS53-216ENST00000574029 RPL28P46779 137 aaKnown RBP12.42□□□□□ -0.42
VPS53-216ENST00000574029 FAM19A2Q8N3H0 131 aa12.42□□□□□ -0.42
VPS53-216ENST00000574029 IFI27L1Q96BM0 104 aa12.42□□□□□ -0.42
VPS53-216ENST00000574029 TRAV12-1A0A0B4J245 112 aa12.41□□□□□ -0.42
VPS53-216ENST00000574029 H3BRM9 83 aa12.41□□□□□ -0.42
VPS53-216ENST00000574029 CXCL5P42830 114 aa12.41□□□□□ -0.42
VPS53-216ENST00000574029 A0A0U1RQV1 116 aa12.39□□□□□ -0.43
VPS53-216ENST00000574029 CRYGAP11844 174 aa12.39□□□□□ -0.43
VPS53-216ENST00000574029 ZNF22P17026 224 aaPredicted RBP12.39□□□□□ -0.43
VPS53-216ENST00000574029 SPINK8P0C7L1 97 aa12.38□□□□□ -0.43
VPS53-216ENST00000574029 TYMSOSQ8TAI1 123 aa12.38□□□□□ -0.43
VPS53-216ENST00000574029 COX7B2Q8TF08 81 aa12.38□□□□□ -0.43
VPS53-216ENST00000574029 LINC00167Q96N53 147 aa12.38□□□□□ -0.43
VPS53-216ENST00000574029 CHTOPQ9Y3Y2 248 aaKnown RBP12.38□□□□□ -0.43
VPS53-216ENST00000574029 IGLV5-39A0A0G2JS06 123 aa12.37□□□□□ -0.43
VPS53-216ENST00000574029 C11orf86A6NJI1 115 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BKO60814 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 LEPROTL1O95214 131 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BJP06899 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 S100A1P23297 94 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BOP23527 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BBP33778 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BDP58876 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST1H2BCP62807 126 aa12.36□□□□□ -0.43
VPS53-216ENST00000574029 HIST2H2BEQ16778 126 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms