RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 IGHV3-33P01772 117 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 COX6CP09669 75 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 IGHV3-30-3P0DP02 117 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 IGHV3-30-5P0DP03 117 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 KRTAP10-4P60372 401 aaPredicted RBP4.44□□□□□ -1.7
VPS53-213ENST00000572334 SRSF9Q13242 221 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS53-213ENST00000572334 ODF1Q14990 250 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 ATXN8Q156A1 80 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 ORMDL2Q53FV1 153 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 ZC2HC1BQ5TFG8 222 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 AMN1Q8IY45 258 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 Q8N8P6 123 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 NAA38Q9BRA0 125 aaKnown RBP4.44□□□□□ -1.7
VPS53-213ENST00000572334 Q9HAA7 133 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 TP73-AS1Q9UF72 201 aa4.44□□□□□ -1.7
VPS53-213ENST00000572334 D6R8Y8 96 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 UQCRQO14949 82 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 UBE2D3P61077 147 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 UBE2D2P62837 147 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 LAGE3Q14657 143 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 RHOHQ15669 191 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 TMEM170BQ5T4T1 132 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 SCGB1D4Q6XE38 83 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 PCP2Q8IVA1 136 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 JPT2Q9H910 190 aa4.43□□□□□ -1.7
VPS53-213ENST00000572334 TRBV7-3A0A075B6L6 115 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 F8VRH5 84 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 FAM229AH3BQW9 127 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 H3BVH4 76 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 PSCAO43653 123 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 SLC25A20O43772 301 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 CRIP1P50238 77 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 LCE3BQ5TA77 95 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 COX8CQ7Z4L0 72 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 DAZ4Q86SG3 579 aaKnown RBP4.42□□□□□ -1.7
VPS53-213ENST00000572334 PRNTQ86SH4 94 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 C14orf178Q8N769 122 aaPredicted RBP4.42□□□□□ -1.7
VPS53-213ENST00000572334 PRADC1Q9BSG0 188 aa4.42□□□□□ -1.7
VPS53-213ENST00000572334 DAZ3Q9NR90 486 aaKnown RBP4.42□□□□□ -1.7
VPS53-213ENST00000572334 LOC389332A0A1B0GUA5 103 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 H3BT86 120 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 LECT2O14960 151 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 NCR2O95944 276 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 ARMS2P0C7Q2 107 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 UBE2D1P51668 147 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 LINC01620Q4KN68 170 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 MRPL51Q4U2R6 128 aaKnown RBP4.41□□□□□ -1.7
VPS53-213ENST00000572334 PIK3CD-AS1Q5SR53 167 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 ZFP2Q6ZN57 461 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 ANKRD29Q8N6D5 301 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 COPS9Q8WXC6 57 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 PRO1854Q9UHT4 67 aa4.41□□□□□ -1.7
VPS53-213ENST00000572334 TRBV7-7A0A0K0K1E9 115 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 KRTAP29-1A8MX34 341 aaPredicted RBP4.4□□□□□ -1.71
VPS53-213ENST00000572334 K7ERJ3 54 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 CXCL5P42830 114 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 C9orf153Q5TBE3 101 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 SCXQ7RTU7 201 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 LINC00528Q8N1L1 170 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 BAALCQ8WXS3 180 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 UBE2WQ96B02 151 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 ZC2HC1AQ96GY0 325 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 CNFNQ9BYD5 112 aa4.4□□□□□ -1.71
VPS53-213ENST00000572334 CSDC2Q9Y534 153 aaKnown RBP4.4□□□□□ -1.71
VPS53-213ENST00000572334 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.39□□□□□ -1.71
VPS53-213ENST00000572334 A0A096LNJ9 63 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 TRAV8-3A0A0A6YYJ7 113 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 A0A0B4J2C4 111 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 TRBV10-2A0A0K0K1G8 114 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 LYZL1Q6UWQ5 148 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 C3orf22Q8N5N4 141 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 KRTAP4-12Q9BQ66 201 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 HMCN2Q8NDA2 5059 aa4.39□□□□□ -1.71
VPS53-213ENST00000572334 ZNF815PA8K554 130 aa4.38□□□□□ -1.71
VPS53-213ENST00000572334 ATOX1O00244 68 aa4.38□□□□□ -1.71
VPS53-213ENST00000572334 SH2D1AO60880 128 aa4.38□□□□□ -1.71
VPS53-213ENST00000572334 TNFRSF6BO95407 300 aa4.38□□□□□ -1.71
VPS53-213ENST00000572334 TMEM258P61165 79 aa4.38□□□□□ -1.71
VPS53-213ENST00000572334 A0A087WWL8 130 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 C9JAW5 83 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 CCDC179H3BU77 68 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 PLA2G1BP04054 148 aaKnown RBP4.37□□□□□ -1.71
VPS53-213ENST00000572334 S100A4P26447 101 aaKnown RBP4.37□□□□□ -1.71
VPS53-213ENST00000572334 LINC00643Q86TS7 51 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 CIRBP-AS1Q8TBR5 109 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 LINC00526Q96FQ7 95 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 TMEM141Q96I45 108 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 SCGB3A1Q96QR1 104 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 KRTAP9-9Q9BYP9 154 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 KRTAP9-4Q9BYQ2 154 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 MRPL35Q9NZE8 188 aaKnown RBP4.37□□□□□ -1.71
VPS53-213ENST00000572334 KLK12Q9UKR0 248 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 TNXBP22105 4242 aa4.37□□□□□ -1.71
VPS53-213ENST00000572334 IGKV2D-26A0A0A0MRZ7 120 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 TRBV30A0A0K0K1B3 111 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 TRACP01848 142 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 CFC1BP0CG36 223 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 CFC1P0CG37 223 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 Q1RN00 199 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 FAM74A4Q5TZK3 123 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms