RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 C6orf226Q5I0X4 101 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 KRTAP3-3Q9BYR6 98 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 KRTAP3-2Q9BYR7 98 aa8.25□□□□□ -1.09
CLK3-224ENST00000568605 COLCA2A8K830 154 aa8.24□□□□□ -1.09
CLK3-224ENST00000568605 TLX1NBP0CAT3 122 aa8.24□□□□□ -1.09
CLK3-224ENST00000568605 IGLC3P0DOY3 106 aa8.24□□□□□ -1.09
CLK3-224ENST00000568605 SMIM1B2RUZ4 78 aa8.23□□□□□ -1.09
CLK3-224ENST00000568605 UNQ6190/PRO20217Q6UXQ8 127 aa8.23□□□□□ -1.09
CLK3-224ENST00000568605 C6orf48Q9UBA6 75 aa8.23□□□□□ -1.09
CLK3-224ENST00000568605 C10orf25Q5T742 122 aa8.22□□□□□ -1.09
CLK3-224ENST00000568605 C2orf82Q6UX34 121 aa8.22□□□□□ -1.09
CLK3-224ENST00000568605 IFI27L1Q96BM0 104 aa8.22□□□□□ -1.09
CLK3-224ENST00000568605 SRRM2Q9UQ35 2752 aaKnown RBP8.22□□□□□ -1.09
CLK3-224ENST00000568605 F8VRH5 84 aa8.21□□□□□ -1.1
CLK3-224ENST00000568605 SERF1AO75920 110 aa8.21□□□□□ -1.1
CLK3-224ENST00000568605 SPINK8P0C7L1 97 aa8.21□□□□□ -1.1
CLK3-224ENST00000568605 COX7B2Q8TF08 81 aa8.21□□□□□ -1.1
CLK3-224ENST00000568605 VPS13BQ7Z7G8 4022 aa8.21□□□□□ -1.1
CLK3-224ENST00000568605 TRAV12-1A0A0B4J245 112 aa8.2□□□□□ -1.1
CLK3-224ENST00000568605 NDUFC2-KCTD14E9PQ53 114 aa8.2□□□□□ -1.1
CLK3-224ENST00000568605 CHTOPQ9Y3Y2 248 aaKnown RBP8.2□□□□□ -1.1
CLK3-224ENST00000568605 SCO1O75880 301 aa8.19□□□□□ -1.1
CLK3-224ENST00000568605 LEPROTL1O95214 131 aa8.19□□□□□ -1.1
CLK3-224ENST00000568605 ZNF22P17026 224 aaPredicted RBP8.19□□□□□ -1.1
CLK3-224ENST00000568605 FAM19A2Q8N3H0 131 aa8.19□□□□□ -1.1
CLK3-224ENST00000568605 GAGE2EQ4V326 116 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 TMEM170BQ5T4T1 132 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 SFTA2Q6UW10 78 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 Q6ZRP5 223 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 GAGE2DQ9UEU5 116 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 HSPB8Q9UJY1 196 aa8.18□□□□□ -1.1
CLK3-224ENST00000568605 FLG2Q5D862 2391 aaPredicted RBP8.17□□□□□ -1.1
CLK3-224ENST00000568605 C11orf86A6NJI1 115 aa8.17□□□□□ -1.1
CLK3-224ENST00000568605 C9orf116Q5BN46 136 aaPredicted RBP8.17□□□□□ -1.1
CLK3-224ENST00000568605 IGLV5-39A0A0G2JS06 123 aa8.16□□□□□ -1.1
CLK3-224ENST00000568605 S100A1P23297 94 aa8.15□□□□□ -1.1
CLK3-224ENST00000568605 LINC00310P59036 64 aa8.15□□□□□ -1.1
CLK3-224ENST00000568605 KRTAP10-4P60372 401 aaPredicted RBP8.15□□□□□ -1.1
CLK3-224ENST00000568605 H0Y8G0 127 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BKO60814 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BJP06899 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BOP23527 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BBP33778 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BDP58876 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BCP62807 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST2H2BEQ16778 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.14□□□□□ -1.11
CLK3-224ENST00000568605 FAM19A5Q7Z5A7 132 aaPredicted RBP8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BHQ93079 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BNQ99877 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 HIST1H2BMQ99879 126 aa8.14□□□□□ -1.11
CLK3-224ENST00000568605 A0A1W2PNN7 141 aa8.13□□□□□ -1.11
CLK3-224ENST00000568605 PRR3P79522 188 aaKnown RBP8.13□□□□□ -1.11
CLK3-224ENST00000568605 FABP4P15090 132 aa8.12□□□□□ -1.11
CLK3-224ENST00000568605 PLNP26678 52 aa8.12□□□□□ -1.11
CLK3-224ENST00000568605 MAP1LC3CQ9BXW4 147 aa8.12□□□□□ -1.11
CLK3-224ENST00000568605 DMBT1Q9UGM3 2413 aaPredicted RBP8.11□□□□□ -1.11
CLK3-224ENST00000568605 M0QXV9 152 aa8.11□□□□□ -1.11
CLK3-224ENST00000568605 ODF1Q14990 250 aa8.11□□□□□ -1.11
CLK3-224ENST00000568605 PKHD1L1Q86WI1 4243 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 TMEM223A0PJW6 202 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 FAM168BA1KXE4 195 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 NUPR1O60356 82 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 ATP6V1G1O75348 118 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 C9orf129Q5T035 196 aaKnown RBP8.1□□□□□ -1.11
CLK3-224ENST00000568605 XAGE1AQ9HD64 81 aa8.1□□□□□ -1.11
CLK3-224ENST00000568605 HERVK_113P61574 105 aa8.09□□□□□ -1.11
CLK3-224ENST00000568605 UBE2BP63146 152 aa8.09□□□□□ -1.11
CLK3-224ENST00000568605 COX17Q14061 63 aa8.09□□□□□ -1.11
CLK3-224ENST00000568605 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
CLK3-224ENST00000568605 ERG28Q9UKR5 140 aa8.09□□□□□ -1.11
CLK3-224ENST00000568605 J3QL48 77 aa8.08□□□□□ -1.12
CLK3-224ENST00000568605 DPM2O94777 84 aa8.08□□□□□ -1.12
CLK3-224ENST00000568605 OXTP01178 125 aa8.07□□□□□ -1.12
CLK3-224ENST00000568605 IGKCP01834 107 aa8.07□□□□□ -1.12
CLK3-224ENST00000568605 PFN2P35080 140 aa8.07□□□□□ -1.12
CLK3-224ENST00000568605 HNRNPA3P51991 378 aaKnown RBP8.07□□□□□ -1.12
CLK3-224ENST00000568605 MYCBP2O75592 4640 aa8.06□□□□□ -1.12
CLK3-224ENST00000568605 LBHQ53QV2 105 aaPredicted RBP8.06□□□□□ -1.12
CLK3-224ENST00000568605 ZNF625Q96I27 306 aaPredicted RBP8.06□□□□□ -1.12
CLK3-224ENST00000568605 TP73-AS1Q9UF72 201 aa8.06□□□□□ -1.12
CLK3-224ENST00000568605 PSORS1C2Q9UIG4 136 aa8.06□□□□□ -1.12
CLK3-224ENST00000568605 KRTAP29-1A8MX34 341 aaPredicted RBP8.05□□□□□ -1.12
CLK3-224ENST00000568605 HERV-K104P63124 156 aa8.05□□□□□ -1.12
CLK3-224ENST00000568605 C1orf137Q5JT78 98 aa8.05□□□□□ -1.12
CLK3-224ENST00000568605 COA6Q5JTJ3 125 aaKnown RBP8.05□□□□□ -1.12
CLK3-224ENST00000568605 NKAPP1Q8N9T2 125 aa8.05□□□□□ -1.12
CLK3-224ENST00000568605 PLEKHB2Q96CS7 222 aa8.05□□□□□ -1.12
CLK3-224ENST00000568605 PLA2G2DQ9UNK4 145 aa8.05□□□□□ -1.12
CLK3-224ENST00000568605 MYMXA0A1B0GTQ4 84 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 LINC00587B1AMM8 73 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 SYS1-DBNDD2H3BUS1 97 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 MEIG1Q5JSS6 88 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 SERTAD4-AS1Q5TG53 156 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 SPINK6Q6UWN8 80 aa8.04□□□□□ -1.12
CLK3-224ENST00000568605 MRPL55Q7Z7F7 128 aaKnown RBP8.04□□□□□ -1.12
CLK3-224ENST00000568605 LEPROTO15243 131 aa8.03□□□□□ -1.12
CLK3-224ENST00000568605 KRTAP7-1Q8IUC3 87 aa8.03□□□□□ -1.12
CLK3-224ENST00000568605 PMCHL2Q9BQD1 86 aa8.03□□□□□ -1.12
CLK3-224ENST00000568605 NDUFA12Q9UI09 145 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms