RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FAM104AQ969W3 186 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 FAT1Q14517 4588 aa6.09□□□□□ -1.43
LDLR-211ENST00000560173 SS18Q15532 418 aa6.08□□□□□ -1.44
LDLR-211ENST00000560173 LINC01620Q4KN68 170 aa6.08□□□□□ -1.44
LDLR-211ENST00000560173 Q6ZSA8 131 aa6.08□□□□□ -1.44
LDLR-211ENST00000560173 HIGD1BQ9P298 99 aa6.08□□□□□ -1.44
LDLR-211ENST00000560173 IGLV4-69A0A075B6H9 119 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 TRAV13-1A0A0B4J241 112 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 TINCRA0A1B0GVN0 87 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 H3BRM9 83 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 CNBPP62633 177 aaKnown RBP6.07□□□□□ -1.44
LDLR-211ENST00000560173 TMEM170BQ5T4T1 132 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 CD164L2Q6UWJ8 174 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 Q8N1X5 172 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 PLEKHB2Q96CS7 222 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 OPRPNQ99935 248 aaPredicted RBP6.07□□□□□ -1.44
LDLR-211ENST00000560173 CHAC1Q9BUX1 264 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 FAM30AQ9NZY2 134 aa6.07□□□□□ -1.44
LDLR-211ENST00000560173 GVQW2A0A096LPI5 108 aaPredicted RBP6.06□□□□□ -1.44
LDLR-211ENST00000560173 HERVK_113P63121 156 aa6.06□□□□□ -1.44
LDLR-211ENST00000560173 HAMPP81172 84 aa6.06□□□□□ -1.44
LDLR-211ENST00000560173 HSD52Q0P140 79 aa6.06□□□□□ -1.44
LDLR-211ENST00000560173 COL5A1-AS1Q5SY13 56 aa6.06□□□□□ -1.44
LDLR-211ENST00000560173 GEMIN7Q9H840 131 aaKnown RBP6.06□□□□□ -1.44
LDLR-211ENST00000560173 DMBT1Q9UGM3 2413 aaPredicted RBP6.06□□□□□ -1.44
LDLR-211ENST00000560173 VPS13BQ7Z7G8 4022 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 IGHV1-58A0A0C4DH39 117 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 MYMXA0A1B0GTQ4 84 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 SLPIP03973 132 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 TAL2Q16559 108 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 HIGD2BQ4VC39 106 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 FAM19A3Q7Z5A8 133 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 C9orf163Q8N9P6 203 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 SNHG12Q9BXW3 62 aa6.05□□□□□ -1.44
LDLR-211ENST00000560173 COX7A2LO14548 114 aa6.04□□□□□ -1.44
LDLR-211ENST00000560173 LEPROTO15243 131 aa6.04□□□□□ -1.44
LDLR-211ENST00000560173 LGALS3P17931 250 aaKnown RBP6.04□□□□□ -1.44
LDLR-211ENST00000560173 PCP2Q8IVA1 136 aa6.04□□□□□ -1.44
LDLR-211ENST00000560173 IGKV2D-26A0A0A0MRZ7 120 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.03□□□□□ -1.44
LDLR-211ENST00000560173 A0A0J9YXV3 536 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 TMEM223A0PJW6 202 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 A6NDN8 102 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 ZNF22P17026 224 aaPredicted RBP6.03□□□□□ -1.44
LDLR-211ENST00000560173 UBE2D1P51668 147 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 C2orf91Q6ZV80 131 aa6.03□□□□□ -1.44
LDLR-211ENST00000560173 UBR4Q5T4S7 5183 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 IGLV5-45A0A087WSX0 123 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 ZNF815PA8K554 130 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 J3QQQ9 107 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 HINT1P49773 126 aaPredicted RBP6.02□□□□□ -1.45
LDLR-211ENST00000560173 BATFQ16520 125 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 SCGB1D4Q6XE38 83 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 SDIM1Q6ZPB5 146 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 C5orf38Q86SI9 138 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 LINC00469Q8N7U9 141 aa6.02□□□□□ -1.45
LDLR-211ENST00000560173 SRRM2Q9UQ35 2752 aaKnown RBP6.01□□□□□ -1.45
LDLR-211ENST00000560173 IGHV3-64A0A075B6Q5 118 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 IGHV3OR16-9A0A0B4J2B5 98 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 MALP21145 153 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 BVES-AS1Q5T3Y7 98 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 LINC00242Q5T6M2 205 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 SCXQ7RTU7 201 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 ORAOV1Q8WV07 137 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 LINC00526Q96FQ7 95 aa6.01□□□□□ -1.45
LDLR-211ENST00000560173 PANO1I0J062 215 aa6□□□□□ -1.45
LDLR-211ENST00000560173 SMR3BP02814 79 aaPredicted RBP6□□□□□ -1.45
LDLR-211ENST00000560173 SFTA2Q6UW10 78 aa6□□□□□ -1.45
LDLR-211ENST00000560173 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6□□□□□ -1.45
LDLR-211ENST00000560173 EPM2AB3EWF7 344 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 ZNF561-AS1K7EIQ3 104 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 APOMO95445 188 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 COX6A2Q02221 97 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 SPAG11BQ08648 103 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 CIRBPQ14011 172 aaKnown RBP5.99□□□□□ -1.45
LDLR-211ENST00000560173 Q5VSD8 79 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 CIRBP-AS1Q8TBR5 109 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 CARD19Q96LW7 228 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 HIST1H4GQ99525 98 aa5.99□□□□□ -1.45
LDLR-211ENST00000560173 SPANXB1Q9NS25 103 aaPredicted RBP5.99□□□□□ -1.45
LDLR-211ENST00000560173 A0A087WZ39 114 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 TMEM238C9JI98 176 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 PTTG1IPP53801 180 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 SYCNQ0VAF6 134 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 SRSF9Q13242 221 aaKnown RBP eCLIP5.98□□□□□ -1.45
LDLR-211ENST00000560173 Q6ZVH6 145 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 CEND1Q8N111 149 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 LINC01561Q8N1V8 128 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 COPS9Q8WXC6 57 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 C2orf48Q96LS8 159 aa5.98□□□□□ -1.45
LDLR-211ENST00000560173 IGLV5-39A0A0G2JS06 123 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 CHTF8P0CG12 524 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 HERV-K104P63124 156 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 Q6ZRU5 148 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 LINC00528Q8N1L1 170 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 SPACA4Q8TDM5 124 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 TP73-AS1Q9UF72 201 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 CDKN2A-AS1Q9UH64 79 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 MYCBP2O75592 4640 aa5.97□□□□□ -1.45
LDLR-211ENST00000560173 FAM229AH3BQW9 127 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms