RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DEFB4AO15263 64 aa8.67□□□□□ -1.02
LDLR-205ENST00000557933 KRTAP1-1Q07627 177 aa8.67□□□□□ -1.02
LDLR-205ENST00000557933 LINC00643Q86TS7 51 aa8.67□□□□□ -1.02
LDLR-205ENST00000557933 WFDC11Q8NEX6 87 aa8.67□□□□□ -1.02
LDLR-205ENST00000557933 LINC00526Q96FQ7 95 aa8.67□□□□□ -1.02
LDLR-205ENST00000557933 CFAP161Q6P656 301 aa8.66□□□□□ -1.02
LDLR-205ENST00000557933 A8MTW9 85 aa8.66□□□□□ -1.02
LDLR-205ENST00000557933 HIST1H4AP62805 103 aaKnown RBP8.66□□□□□ -1.02
LDLR-205ENST00000557933 C9orf116Q5BN46 136 aaPredicted RBP8.66□□□□□ -1.02
LDLR-205ENST00000557933 LINC01600Q96MT4 127 aa8.65□□□□□ -1.02
LDLR-205ENST00000557933 TRACP01848 142 aa8.65□□□□□ -1.03
LDLR-205ENST00000557933 HILS1P60008 231 aa8.65□□□□□ -1.03
LDLR-205ENST00000557933 GIG44P09565 113 aaPredicted RBP8.64□□□□□ -1.03
LDLR-205ENST00000557933 C4orf3Q8WVX3 66 aa8.64□□□□□ -1.03
LDLR-205ENST00000557933 C6orf226Q5I0X4 101 aa8.64□□□□□ -1.03
LDLR-205ENST00000557933 FAM110AQ9BQ89 295 aa8.64□□□□□ -1.03
LDLR-205ENST00000557933 CCL24O00175 119 aa8.64□□□□□ -1.03
LDLR-205ENST00000557933 CXCL5P42830 114 aa8.64□□□□□ -1.03
LDLR-205ENST00000557933 C3orf22Q8N5N4 141 aa8.63□□□□□ -1.03
LDLR-205ENST00000557933 A0A1B0GX51 115 aa8.63□□□□□ -1.03
LDLR-205ENST00000557933 RNF152Q8N8N0 203 aa8.63□□□□□ -1.03
LDLR-205ENST00000557933 KIR2DL5BQ8NHK3 375 aa8.63□□□□□ -1.03
LDLR-205ENST00000557933 TRAV13-2A0A0B4J235 113 aa8.62□□□□□ -1.03
LDLR-205ENST00000557933 F8P00451 2351 aa8.62□□□□□ -1.03
LDLR-205ENST00000557933 PLAC8L1A1L4L8 177 aa8.61□□□□□ -1.03
LDLR-205ENST00000557933 RPL28P46779 137 aaKnown RBP8.61□□□□□ -1.03
LDLR-205ENST00000557933 IGHV3OR16-9A0A0B4J2B5 98 aa8.6□□□□□ -1.03
LDLR-205ENST00000557933 ACYP1P07311 99 aa8.6□□□□□ -1.03
LDLR-205ENST00000557933 INAFM2P0DMQ5 153 aa8.6□□□□□ -1.03
LDLR-205ENST00000557933 TRBV6-8A0A0A6YYG3 113 aa8.59□□□□□ -1.03
LDLR-205ENST00000557933 TRBV10-1A0A0K0K1A3 114 aa8.59□□□□□ -1.03
LDLR-205ENST00000557933 DNAJC9-AS1A6NH13 148 aa8.59□□□□□ -1.03
LDLR-205ENST00000557933 DSCR8Q96T75 97 aa8.59□□□□□ -1.03
LDLR-205ENST00000557933 SPATA3Q8NHX4 192 aa8.58□□□□□ -1.04
LDLR-205ENST00000557933 IL17DQ8TAD2 202 aa8.58□□□□□ -1.04
LDLR-205ENST00000557933 OTOGQ6ZRI0 2925 aa8.58□□□□□ -1.04
LDLR-205ENST00000557933 UQCRQO14949 82 aa8.58□□□□□ -1.04
LDLR-205ENST00000557933 TRAV23DV6A0A075B6W5 121 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 COPS9Q8WXC6 57 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 CSDC2Q9Y534 153 aaKnown RBP8.57□□□□□ -1.04
LDLR-205ENST00000557933 GYPEP15421 78 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 FAM19A1Q7Z5A9 133 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 LINC00959A0A1B0GUT2 108 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 FHL2Q14192 279 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 LINC01561Q8N1V8 128 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 C2orf48Q96LS8 159 aa8.57□□□□□ -1.04
LDLR-205ENST00000557933 BAHCC1Q9P281 2608 aa8.56□□□□□ -1.04
LDLR-205ENST00000557933 COX7CP15954 63 aa8.56□□□□□ -1.04
LDLR-205ENST00000557933 LINC00269Q8N2A0 174 aa8.56□□□□□ -1.04
LDLR-205ENST00000557933 SS18Q15532 418 aa8.56□□□□□ -1.04
LDLR-205ENST00000557933 Q8NDZ9 215 aa8.56□□□□□ -1.04
LDLR-205ENST00000557933 ANK3Q12955 4377 aaKnown RBP8.55□□□□□ -1.04
LDLR-205ENST00000557933 IMUPQ9GZP8 106 aa8.55□□□□□ -1.04
LDLR-205ENST00000557933 TMEM126AQ9H061 195 aa8.54□□□□□ -1.04
LDLR-205ENST00000557933 LINC00482Q8N8I6 264 aa8.54□□□□□ -1.04
LDLR-205ENST00000557933 USP17L23D6RBM5 183 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 M0R2N4 97 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 FAM222AQ5U5X8 452 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 ENHOQ6UWT2 76 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 C6orf223Q8N319 242 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 A0A087WZ39 114 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 HTN3P15516 51 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 FAM19A5Q7Z5A7 132 aaPredicted RBP8.53□□□□□ -1.04
LDLR-205ENST00000557933 C16orf74Q96GX8 76 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 ORMDL1Q9P0S3 153 aa8.53□□□□□ -1.04
LDLR-205ENST00000557933 RPL18AQ02543 176 aaKnown RBP8.52□□□□□ -1.05
LDLR-205ENST00000557933 C16orf95Q9H693 158 aa8.52□□□□□ -1.05
LDLR-205ENST00000557933 TRBV6-4A0A1B0GX49 114 aa8.52□□□□□ -1.05
LDLR-205ENST00000557933 C6orf99Q4VX62 202 aa8.52□□□□□ -1.05
LDLR-205ENST00000557933 FAM19A3Q7Z5A8 133 aa8.52□□□□□ -1.05
LDLR-205ENST00000557933 IBA57-AS1B1ANH7 110 aa8.51□□□□□ -1.05
LDLR-205ENST00000557933 NANOS2P60321 138 aaKnown RBP8.51□□□□□ -1.05
LDLR-205ENST00000557933 ANGP03950 147 aaKnown RBP8.5□□□□□ -1.05
LDLR-205ENST00000557933 PF4P02776 101 aa8.5□□□□□ -1.05
LDLR-205ENST00000557933 LINC01006Q8NI28 216 aa8.5□□□□□ -1.05
LDLR-205ENST00000557933 ATOX1O00244 68 aa8.5□□□□□ -1.05
LDLR-205ENST00000557933 C10orf25Q5T742 122 aa8.5□□□□□ -1.05
LDLR-205ENST00000557933 SCXQ7RTU7 201 aa8.5□□□□□ -1.05
LDLR-205ENST00000557933 FBN1P35555 2871 aaKnown RBP8.49□□□□□ -1.05
LDLR-205ENST00000557933 H0YGX0 51 aa8.49□□□□□ -1.05
LDLR-205ENST00000557933 OXTP01178 125 aa8.49□□□□□ -1.05
LDLR-205ENST00000557933 CSNK1G2-AS1Q8NCQ2 148 aa8.49□□□□□ -1.05
LDLR-205ENST00000557933 LY6G6DO95868 133 aa8.49□□□□□ -1.05
LDLR-205ENST00000557933 C19orf73Q9NVV2 129 aa8.49□□□□□ -1.05
LDLR-205ENST00000557933 SMR3AQ99954 134 aa8.48□□□□□ -1.05
LDLR-205ENST00000557933 NOTCH1P46531 2555 aa8.48□□□□□ -1.05
LDLR-205ENST00000557933 GHRHP01286 108 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 XAGE1AQ9HD64 81 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 C20orf197Q8N268 126 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 Q8N814 137 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 HAMPP81172 84 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 DEFB135Q30KP9 77 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 S100A7L2Q5SY68 101 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 UNQ6190/PRO20217Q6UXQ8 127 aa8.47□□□□□ -1.05
LDLR-205ENST00000557933 LAMTOR3Q9UHA4 124 aa8.46□□□□□ -1.06
LDLR-205ENST00000557933 CHCHD10Q8WYQ3 142 aaPredicted RBP8.46□□□□□ -1.06
LDLR-205ENST00000557933 MAST4O15021 2626 aa8.45□□□□□ -1.06
LDLR-205ENST00000557933 J3KT08 172 aa8.45□□□□□ -1.06
LDLR-205ENST00000557933 Q6JHZ5 121 aa8.45□□□□□ -1.06
LDLR-205ENST00000557933 SERP2Q8N6R1 65 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms