RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NOTCH3Q9UM47 2321 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 PAX4O43316 350 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 GYPEP15421 78 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 CEMP1Q6PRD7 247 aaPredicted RBP8.88□□□□□ -0.99
SHMT2-229ENST00000557348 C3orf22Q8N5N4 141 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 LINC00526Q96FQ7 95 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 VSIG2Q96IQ7 327 aa8.88□□□□□ -0.99
SHMT2-229ENST00000557348 IGLV5-45A0A087WSX0 123 aa8.87□□□□□ -0.99
SHMT2-229ENST00000557348 KRTAP10-11P60412 298 aa8.87□□□□□ -0.99
SHMT2-229ENST00000557348 LOC100131303A0A0U1RQF7 123 aa8.86□□□□□ -0.99
SHMT2-229ENST00000557348 CDC42SE2Q9NRR3 84 aa8.86□□□□□ -0.99
SHMT2-229ENST00000557348 COX7A2LO14548 114 aa8.85□□□□□ -0.99
SHMT2-229ENST00000557348 NDUFA1O15239 70 aa8.85□□□□□ -0.99
SHMT2-229ENST00000557348 C11orf68Q9H3H3 251 aaKnown RBP8.85□□□□□ -0.99
SHMT2-229ENST00000557348 H7C2G1 150 aa8.85□□□□□ -0.99
SHMT2-229ENST00000557348 PRSS2P07478 247 aa8.85□□□□□ -0.99
SHMT2-229ENST00000557348 CHCHD5Q9BSY4 110 aa8.85□□□□□ -0.99
SHMT2-229ENST00000557348 TENM1Q9UKZ4 2725 aa8.84□□□□□ -0.99
SHMT2-229ENST00000557348 C5orf38Q86SI9 138 aa8.84□□□□□ -0.99
SHMT2-229ENST00000557348 A0A1B0GUV1 79 aa8.83□□□□□ -1
SHMT2-229ENST00000557348 ATOX1O00244 68 aa8.83□□□□□ -1
SHMT2-229ENST00000557348 RNASE13Q5GAN3 156 aaKnown RBP8.83□□□□□ -1
SHMT2-229ENST00000557348 ANK2Q01484 3957 aa8.83□□□□□ -1
SHMT2-229ENST00000557348 H3BNG1 76 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 J3KT08 172 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 CRYGAP11844 174 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 LINC00242Q5T6M2 205 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 F5H768 121 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 DEFB4AO15263 64 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 COX7CP15954 63 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 C9orf153Q5TBE3 101 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 CELA1Q9UNI1 258 aa8.81□□□□□ -1
SHMT2-229ENST00000557348 TRAV13-1A0A0B4J241 112 aa8.8□□□□□ -1
SHMT2-229ENST00000557348 FAM236AA0A1B0GUQ0 79 aa8.8□□□□□ -1
SHMT2-229ENST00000557348 FAM236BA0A1B0GV22 79 aa8.8□□□□□ -1
SHMT2-229ENST00000557348 CDKN2A-AS1Q9UH64 79 aa8.8□□□□□ -1
SHMT2-229ENST00000557348 IGLV5-39A0A0G2JS06 123 aa8.79□□□□□ -1
SHMT2-229ENST00000557348 HIST1H4AP62805 103 aaKnown RBP8.79□□□□□ -1
SHMT2-229ENST00000557348 C5orf47Q569G3 176 aa8.79□□□□□ -1
SHMT2-229ENST00000557348 FBN3Q75N90 2809 aa8.78□□□□□ -1
SHMT2-229ENST00000557348 ADAMTSL4-AS1Q5T5F5 129 aa8.78□□□□□ -1
SHMT2-229ENST00000557348 VWFP04275 2813 aa8.78□□□□□ -1
SHMT2-229ENST00000557348 IGHV3-64A0A075B6Q5 118 aa8.77□□□□□ -1.01
SHMT2-229ENST00000557348 TRAV8-3A0A0A6YYJ7 113 aa8.77□□□□□ -1.01
SHMT2-229ENST00000557348 TRAV13-2A0A0B4J235 113 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 SS18Q15532 418 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 LELP1Q5T871 98 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 OR13C6PQ8NH95 151 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 LINC00308Q8TCZ7 52 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 CLEC2BQ92478 149 aa8.76□□□□□ -1.01
SHMT2-229ENST00000557348 LINC01561Q8N1V8 128 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 IGLV4-60A0A075B6I1 120 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 SMIM1B2RUZ4 78 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 HTN3P15516 51 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 TMEM258P61165 79 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 COX6A2Q02221 97 aa8.75□□□□□ -1.01
SHMT2-229ENST00000557348 KPRPQ5T749 579 aaPredicted RBP8.75□□□□□ -1.01
SHMT2-229ENST00000557348 H0YGX0 51 aa8.74□□□□□ -1.01
SHMT2-229ENST00000557348 RPL28P46779 137 aaKnown RBP8.74□□□□□ -1.01
SHMT2-229ENST00000557348 LINC00959A0A1B0GUT2 108 aa8.73□□□□□ -1.01
SHMT2-229ENST00000557348 BAALC-AS2P0C853 105 aa8.73□□□□□ -1.01
SHMT2-229ENST00000557348 A0A087WZ39 114 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 A0A096LPF7 62 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 S100A7L2Q5SY68 101 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 Q6JHZ5 121 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 GAGE2AQ6NT46 116 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 RETNQ9HD89 108 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 IGHV3OR16-9A0A0B4J2B5 98 aa8.72□□□□□ -1.01
SHMT2-229ENST00000557348 NDUFC2-KCTD14E9PQ53 114 aa8.71□□□□□ -1.02
SHMT2-229ENST00000557348 RPL18AQ02543 176 aaKnown RBP8.71□□□□□ -1.02
SHMT2-229ENST00000557348 C11orf45Q8TAV5 145 aa8.71□□□□□ -1.02
SHMT2-229ENST00000557348 TM2D3Q9BRN9 247 aa8.71□□□□□ -1.02
SHMT2-229ENST00000557348 ATP5EP2Q5VTU8 51 aa8.7□□□□□ -1.02
SHMT2-229ENST00000557348 C2orf48Q96LS8 159 aa8.7□□□□□ -1.02
SHMT2-229ENST00000557348 OBSCN-AS1Q96MR7 158 aa8.7□□□□□ -1.02
SHMT2-229ENST00000557348 IGKV3OR2-268A0A0C4DH90 116 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 A0A0J9YWU9 116 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 BCE1O60756 84 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 MALP21145 153 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 COX7B2Q8TF08 81 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 ZNF625Q96I27 306 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-229ENST00000557348 Q9H8V8 135 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 ANGP03950 147 aaKnown RBP8.69□□□□□ -1.02
SHMT2-229ENST00000557348 Q6ZTC4 211 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 SERP2Q8N6R1 65 aa8.69□□□□□ -1.02
SHMT2-229ENST00000557348 REG3AQ06141 175 aa8.68□□□□□ -1.02
SHMT2-229ENST00000557348 CD164L2Q6UWJ8 174 aa8.68□□□□□ -1.02
SHMT2-229ENST00000557348 LYPD5Q6UWN5 251 aa8.68□□□□□ -1.02
SHMT2-229ENST00000557348 SMCR5Q8TEV8 140 aa8.68□□□□□ -1.02
SHMT2-229ENST00000557348 DEFB131BA0A096LNP1 70 aa8.67□□□□□ -1.02
SHMT2-229ENST00000557348 K7EIL1 84 aa8.67□□□□□ -1.02
SHMT2-229ENST00000557348 DNAL4O96015 105 aa8.67□□□□□ -1.02
SHMT2-229ENST00000557348 NBEAL1Q6ZS30 2694 aa8.67□□□□□ -1.02
SHMT2-229ENST00000557348 TRAV10A0A0B4J240 114 aa8.66□□□□□ -1.02
SHMT2-229ENST00000557348 LINC00269Q8N2A0 174 aa8.66□□□□□ -1.02
SHMT2-229ENST00000557348 Q8IZM0 81 aa8.65□□□□□ -1.02
SHMT2-229ENST00000557348 TRBV10-3A0A0K0K1G6 114 aa8.65□□□□□ -1.03
SHMT2-229ENST00000557348 CRPP02741 224 aa8.65□□□□□ -1.03
SHMT2-229ENST00000557348 XCL1P47992 114 aa8.65□□□□□ -1.03
SHMT2-229ENST00000557348 PRR34Q9NV39 138 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms