RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 OR2D3Q8NGH3 330 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 PTH2Q96A98 100 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 AP1S3Q96PC3 154 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 CHCHD7Q9BUK0 85 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 ACTR3CQ9C0K3 210 aaPredicted RBP1.33□□□□□ -2.2
SCFD1-219ENST00000556413 RNASE7Q9H1E1 156 aaKnown RBP1.33□□□□□ -2.2
SCFD1-219ENST00000556413 TMEM167BQ9NRX6 74 aa1.33□□□□□ -2.2
SCFD1-219ENST00000556413 GVQW2A0A096LPI5 108 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-219ENST00000556413 TRAV13-1A0A0B4J241 112 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 CTXND1A0A1B0GTU2 59 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 SERTM2A0A1B0GWG4 89 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 A0A1W2PRE2 83 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.32□□□□□ -2.2
SCFD1-219ENST00000556413 ARPC5O15511 151 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 FGF6P10767 208 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 RPL35P42766 123 aaKnown RBP1.32□□□□□ -2.2
SCFD1-219ENST00000556413 UBE2BP63146 152 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 EIF5AP63241 154 aaKnown RBP1.32□□□□□ -2.2
SCFD1-219ENST00000556413 COTL1Q14019 142 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 AKR1C8PQ5T2L2 129 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 RASL11AQ6T310 242 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 LYZL1Q6UWQ5 148 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 Q6ZUT4 128 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 BAGE2Q86Y30 109 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 ARL6IP6Q8N6S5 226 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 LINC00469Q8N7U9 141 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 FER1L6-AS1Q8NA97 138 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 GATD1Q8NB37 220 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 OR5A1Q8NGJ0 315 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 SFT2D1Q8WV19 159 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 FMC1Q96HJ9 113 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 CCDC32Q9BV29 185 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 GNG13Q9P2W3 67 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 VAX2Q9UIW0 290 aa1.32□□□□□ -2.2
SCFD1-219ENST00000556413 USH2AO75445 5202 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 IGHV1-58A0A0C4DH39 117 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 LINC00959A0A1B0GUT2 108 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 G3V3Q6 166 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 M0QXV9 152 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 PFDN1O60925 122 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 SCO1O75880 301 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 IGLV7-43P04211 117 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 IGLC6P0CF74 106 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 PET100P0DJ07 73 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 NTF3P20783 257 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 UBE2D1P51668 147 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 CEBPGP53567 150 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 SPAG11BQ08648 103 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 C2orf82Q6UX34 121 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-219ENST00000556413 NUP35Q8NFH5 326 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 ORAOV1Q8WV07 137 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 HIST1H2BAQ96A08 127 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 PSMG3Q9BT73 122 aaPredicted RBP1.31□□□□□ -2.2
SCFD1-219ENST00000556413 MED28Q9H204 178 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 C6orf48Q9UBA6 75 aa1.31□□□□□ -2.2
SCFD1-219ENST00000556413 TRBV20OR9-2A0A075B6H5 130 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 BORCS7-ASMTA0A0B4J1R7 106 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 TRAV8-4A0A0B4J246 113 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 LOC107984640A0A0U1RRK4 108 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 C19orf71A6NCJ1 209 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 SDHAF1A6NFY7 115 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 TEX46H3BTG2 121 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 K7EN84 100 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 APOMO95445 188 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 IFNA1P01562 189 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 P01737 135 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 MBP02144 154 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 P0C880 135 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 PMCHP20382 165 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 GNG4P50150 75 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 PKIAP61925 76 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 RPL39P62891 51 aaKnown RBP1.3□□□□□ -2.2
SCFD1-219ENST00000556413 UNQ6190/PRO20217Q6UXQ8 127 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 AMN1Q8IY45 258 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 ZNF664Q8N3J9 261 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 KCNRGQ8N5I3 272 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 MARVELD1Q9BSK0 173 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 XAGE1AQ9HD64 81 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 NIT2Q9NQR4 276 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 TNFSF18Q9UNG2 199 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 ZFP30Q9Y2G7 519 aa1.3□□□□□ -2.2
SCFD1-219ENST00000556413 COX7A2LO14548 114 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 TRGC1P0CF51 173 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 PRLHP81277 87 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 SERF2P84101 59 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 SS18Q15532 418 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 TMEM97Q5BJF2 176 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 EIF5AL1Q6IS14 154 aaKnown RBP1.29□□□□□ -2.2
SCFD1-219ENST00000556413 MRPL55Q7Z7F7 128 aaKnown RBP1.29□□□□□ -2.2
SCFD1-219ENST00000556413 C3orf22Q8N5N4 141 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 ST20-AS1Q8NBB2 130 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 DIRC1Q969H9 104 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 MRAP2Q96G30 205 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 BTF3L4Q96K17 158 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 MED9Q9NWA0 146 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 TOMM7Q9P0U1 55 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 UBE2D4Q9Y2X8 147 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 CBY1Q9Y3M2 126 aa1.29□□□□□ -2.2
SCFD1-219ENST00000556413 CSDC2Q9Y534 153 aaKnown RBP1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms