RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NOTCH1P46531 2555 aa11.21□□□□□ -0.62
COL4A1-204ENST00000543140 LINC01620Q4KN68 170 aa11.2□□□□□ -0.62
COL4A1-204ENST00000543140 TENM3Q9P273 2699 aa11.2□□□□□ -0.62
COL4A1-204ENST00000543140 COL6A5A8TX70 2615 aa11.2□□□□□ -0.62
COL4A1-204ENST00000543140 REG3AQ06141 175 aa11.2□□□□□ -0.62
COL4A1-204ENST00000543140 C2orf82Q6UX34 121 aa11.19□□□□□ -0.62
COL4A1-204ENST00000543140 TEN1Q86WV5 123 aa11.19□□□□□ -0.62
COL4A1-204ENST00000543140 ANKRD29Q8N6D5 301 aa11.19□□□□□ -0.62
COL4A1-204ENST00000543140 CHCHD10Q8WYQ3 142 aaPredicted RBP11.19□□□□□ -0.62
COL4A1-204ENST00000543140 SHISA2Q6UWI4 295 aa11.18□□□□□ -0.62
COL4A1-204ENST00000543140 CARD19Q96LW7 228 aa11.18□□□□□ -0.62
COL4A1-204ENST00000543140 EGFEM1PQ0D2K5 195 aa11.17□□□□□ -0.62
COL4A1-204ENST00000543140 SND1-IT1Q9HBX3 110 aa11.17□□□□□ -0.62
COL4A1-204ENST00000543140 CYSRT1A8MQ03 144 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 IBA57-AS1B1ANH7 110 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 LELP1Q5T871 98 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 CD164L2Q6UWJ8 174 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 SPATA25Q9BR10 227 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 BAHCC1Q9P281 2608 aa11.16□□□□□ -0.62
COL4A1-204ENST00000543140 COX7A2LO14548 114 aa11.15□□□□□ -0.62
COL4A1-204ENST00000543140 PPDPFLQ8WWR9 84 aa11.15□□□□□ -0.62
COL4A1-204ENST00000543140 CCL18P55774 89 aa11.15□□□□□ -0.62
COL4A1-204ENST00000543140 Q8IZM0 81 aa11.15□□□□□ -0.62
COL4A1-204ENST00000543140 KLK12Q9UKR0 248 aa11.14□□□□□ -0.63
COL4A1-204ENST00000543140 ANK2Q01484 3957 aa11.14□□□□□ -0.63
COL4A1-204ENST00000543140 MALP21145 153 aa11.14□□□□□ -0.63
COL4A1-204ENST00000543140 LYPD5Q6UWN5 251 aa11.14□□□□□ -0.63
COL4A1-204ENST00000543140 Q6ZTC4 211 aa11.14□□□□□ -0.63
COL4A1-204ENST00000543140 IGKV2-28A0A075B6P5 120 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 LST1O00453 97 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 IGKV2D-28P01615 120 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 CKS1BP61024 79 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 LINC00337Q8N6G1 96 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 CDIP1Q9H305 208 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 TRBV10-2A0A0K0K1G8 114 aa11.13□□□□□ -0.63
COL4A1-204ENST00000543140 CRPP02741 224 aa11.12□□□□□ -0.63
COL4A1-204ENST00000543140 NTN5Q8WTR8 489 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-204ENST00000543140 MT-ATP8P03928 68 aa11.11□□□□□ -0.63
COL4A1-204ENST00000543140 KPRPQ5T749 579 aaPredicted RBP11.11□□□□□ -0.63
COL4A1-204ENST00000543140 KIAA0087Q14695 138 aa11.11□□□□□ -0.63
COL4A1-204ENST00000543140 PPDPFQ9H3Y8 114 aa11.11□□□□□ -0.63
COL4A1-204ENST00000543140 A0A0J9YWU9 116 aa11.1□□□□□ -0.63
COL4A1-204ENST00000543140 PRB2P02812 416 aaPredicted RBP11.1□□□□□ -0.63
COL4A1-204ENST00000543140 CFAP161Q6P656 301 aa11.1□□□□□ -0.63
COL4A1-204ENST00000543140 TRAV13-2A0A0B4J235 113 aa11.1□□□□□ -0.63
COL4A1-204ENST00000543140 LINC01561Q8N1V8 128 aa11.1□□□□□ -0.63
COL4A1-204ENST00000543140 TEX49A0A1B0GTD5 131 aa11.09□□□□□ -0.63
COL4A1-204ENST00000543140 M0QXV9 152 aa11.09□□□□□ -0.63
COL4A1-204ENST00000543140 C9orf116Q5BN46 136 aaPredicted RBP11.09□□□□□ -0.63
COL4A1-204ENST00000543140 LINC00526Q96FQ7 95 aa11.09□□□□□ -0.63
COL4A1-204ENST00000543140 NBEAL1Q6ZS30 2694 aa11.09□□□□□ -0.63
COL4A1-204ENST00000543140 CMYA5Q8N3K9 4069 aa11.08□□□□□ -0.63
COL4A1-204ENST00000543140 XGP55808 180 aa11.08□□□□□ -0.64
COL4A1-204ENST00000543140 NANOS2P60321 138 aaKnown RBP11.08□□□□□ -0.64
COL4A1-204ENST00000543140 ENHOQ6UWT2 76 aa11.08□□□□□ -0.64
COL4A1-204ENST00000543140 WFDC10BQ8IUB3 73 aa11.07□□□□□ -0.64
COL4A1-204ENST00000543140 C6orf223Q8N319 242 aa11.07□□□□□ -0.64
COL4A1-204ENST00000543140 PRR34Q9NV39 138 aa11.07□□□□□ -0.64
COL4A1-204ENST00000543140 UBE2WQ96B02 151 aa11.06□□□□□ -0.64
COL4A1-204ENST00000543140 FAM218AQ96MZ4 157 aa11.06□□□□□ -0.64
COL4A1-204ENST00000543140 OR13C6PQ8NH95 151 aa11.06□□□□□ -0.64
COL4A1-204ENST00000543140 SMIM11BQ8TCY0 68 aa11.05□□□□□ -0.64
COL4A1-204ENST00000543140 PRR3P79522 188 aaKnown RBP11.05□□□□□ -0.64
COL4A1-204ENST00000543140 H3BT86 120 aa11.04□□□□□ -0.64
COL4A1-204ENST00000543140 RPL28P46779 137 aaKnown RBP11.04□□□□□ -0.64
COL4A1-204ENST00000543140 C10orf25Q5T742 122 aa11.04□□□□□ -0.64
COL4A1-204ENST00000543140 C11orf45Q8TAV5 145 aa11.04□□□□□ -0.64
COL4A1-204ENST00000543140 LINC01600Q96MT4 127 aa11.04□□□□□ -0.64
COL4A1-204ENST00000543140 CXCL5P42830 114 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 SPAG11BQ08648 103 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 UNQ6190/PRO20217Q6UXQ8 127 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 DEFB131BA0A096LNP1 70 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 H3BNG1 76 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 SCGB1A1P11684 91 aa11.03□□□□□ -0.64
COL4A1-204ENST00000543140 TRAV8-4A0A0B4J246 113 aa11.02□□□□□ -0.64
COL4A1-204ENST00000543140 ESRGQ1W209 222 aa11.02□□□□□ -0.64
COL4A1-204ENST00000543140 KLK5Q9Y337 293 aaPredicted RBP11.02□□□□□ -0.65
COL4A1-204ENST00000543140 COX17Q14061 63 aa11□□□□□ -0.65
COL4A1-204ENST00000543140 Q9HAA7 133 aa11□□□□□ -0.65
COL4A1-204ENST00000543140 MRAPQ8TCY5 172 aa11□□□□□ -0.65
COL4A1-204ENST00000543140 TRACP01848 142 aa10.99□□□□□ -0.65
COL4A1-204ENST00000543140 A0A087WYN8 130 aa10.98□□□□□ -0.65
COL4A1-204ENST00000543140 MGAM2Q2M2H8 2515 aa10.98□□□□□ -0.65
COL4A1-204ENST00000543140 BAALC-AS2P0C853 105 aa10.97□□□□□ -0.65
COL4A1-204ENST00000543140 DEFB121Q5J5C9 76 aa10.97□□□□□ -0.65
COL4A1-204ENST00000543140 A0A1B0GV72 72 aa10.97□□□□□ -0.65
COL4A1-204ENST00000543140 Q8NDZ9 215 aa10.97□□□□□ -0.65
COL4A1-204ENST00000543140 DNAH3Q8TD57 4116 aa10.95□□□□□ -0.66
COL4A1-204ENST00000543140 NCR3O14931 201 aa10.95□□□□□ -0.66
COL4A1-204ENST00000543140 HIGD2BQ4VC39 106 aa10.95□□□□□ -0.66
COL4A1-204ENST00000543140 K7EIL1 84 aa10.94□□□□□ -0.66
COL4A1-204ENST00000543140 H0YGX0 51 aa10.93□□□□□ -0.66
COL4A1-204ENST00000543140 LECT2O14960 151 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 NDUFC2O95298 119 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 DNAL4O96015 105 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 KRTAP26-1Q6PEX3 210 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 C22orf24Q9Y442 160 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 C6orf48Q9UBA6 75 aa10.92□□□□□ -0.66
COL4A1-204ENST00000543140 ZNF561-AS1K7EIQ3 104 aa10.9□□□□□ -0.66
COL4A1-204ENST00000543140 SLPIP03973 132 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms