RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 FAM104BQ5XKR9 115 aa9.38□□□□□ -0.91
RTN3-211ENST00000542238 C18orf32Q8TCD1 76 aa9.38□□□□□ -0.91
RTN3-211ENST00000542238 PAM16Q9Y3D7 125 aa9.38□□□□□ -0.91
RTN3-211ENST00000542238 C20orf202A1L168 122 aa9.37□□□□□ -0.91
RTN3-211ENST00000542238 SUMO2P61956 95 aaKnown RBP9.37□□□□□ -0.91
RTN3-211ENST00000542238 KIAA1644Q3SXP7 199 aa9.37□□□□□ -0.91
RTN3-211ENST00000542238 F8WDY8 70 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 H0Y9J4 135 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 SMKR1H3BMG3 65 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 PPBPP02775 128 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 C3orf79P0CE67 100 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 Q6ZUT4 128 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 TIMM21Q9BVV7 248 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 MRPL35Q9NZE8 188 aaKnown RBP9.36□□□□□ -0.91
RTN3-211ENST00000542238 UQCR10Q9UDW1 63 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 LPAP08519 4548 aa9.36□□□□□ -0.91
RTN3-211ENST00000542238 IGLV1-50A0A075B6I6 118 aa9.35□□□□□ -0.91
RTN3-211ENST00000542238 NDUFA1O15239 70 aa9.35□□□□□ -0.91
RTN3-211ENST00000542238 PMCHL1Q16048 86 aa9.35□□□□□ -0.91
RTN3-211ENST00000542238 SPATA45Q537H7 98 aa9.35□□□□□ -0.91
RTN3-211ENST00000542238 ORAOV1Q8WV07 137 aa9.35□□□□□ -0.91
RTN3-211ENST00000542238 ALKBH7Q9BT30 221 aaPredicted RBP9.35□□□□□ -0.91
RTN3-211ENST00000542238 NRACQ8N912 160 aa9.34□□□□□ -0.91
RTN3-211ENST00000542238 DLEU1O43261 78 aa9.33□□□□□ -0.92
RTN3-211ENST00000542238 HSBP1O75506 76 aa9.33□□□□□ -0.92
RTN3-211ENST00000542238 IGLC3P0DOY3 106 aa9.33□□□□□ -0.92
RTN3-211ENST00000542238 LAMTOR2Q9Y2Q5 125 aa9.33□□□□□ -0.92
RTN3-211ENST00000542238 FAM168BA1KXE4 195 aa9.32□□□□□ -0.92
RTN3-211ENST00000542238 UBE2D1P51668 147 aa9.32□□□□□ -0.92
RTN3-211ENST00000542238 RPL32P62910 135 aaKnown RBP9.32□□□□□ -0.92
RTN3-211ENST00000542238 MRPL51Q4U2R6 128 aaKnown RBP9.32□□□□□ -0.92
RTN3-211ENST00000542238 COL5A1-AS1Q5SY13 56 aa9.32□□□□□ -0.92
RTN3-211ENST00000542238 FAM19A5Q7Z5A7 132 aaPredicted RBP9.32□□□□□ -0.92
RTN3-211ENST00000542238 CHCHD1Q96BP2 118 aaKnown RBP9.32□□□□□ -0.92
RTN3-211ENST00000542238 LINC00614P0C842 121 aa9.31□□□□□ -0.92
RTN3-211ENST00000542238 TLX1NBP0CAT3 122 aa9.31□□□□□ -0.92
RTN3-211ENST00000542238 PRR4Q16378 134 aa9.31□□□□□ -0.92
RTN3-211ENST00000542238 C20orf78Q9BR46 151 aa9.31□□□□□ -0.92
RTN3-211ENST00000542238 IGHV3OR16-9A0A0B4J2B5 98 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 PRSS47A8MTI9 375 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 G0S2P27469 103 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 RPL13AP40429 203 aaKnown RBP9.3□□□□□ -0.92
RTN3-211ENST00000542238 UBE2BP63146 152 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 GAGE2EQ4V326 116 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 C10orf25Q5T742 122 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 UNQ6190/PRO20217Q6UXQ8 127 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 KRTAP11-1Q8IUC1 163 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 FAM19A2Q8N3H0 131 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 GAGE2DQ9UEU5 116 aa9.3□□□□□ -0.92
RTN3-211ENST00000542238 RPL39P62891 51 aaKnown RBP9.29□□□□□ -0.92
RTN3-211ENST00000542238 ORMDL3Q8N138 153 aa9.29□□□□□ -0.92
RTN3-211ENST00000542238 SPANXA1Q9NS26 97 aa9.29□□□□□ -0.92
RTN3-211ENST00000542238 A0A0U1RQV1 116 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 KRTAP1-4P0C5Y4 121 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 CKS2P33552 79 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 Q6ZN92 141 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 URB1-AS1Q96HZ7 61 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 C6orf48Q9UBA6 75 aa9.28□□□□□ -0.92
RTN3-211ENST00000542238 M0QXV9 152 aa9.27□□□□□ -0.93
RTN3-211ENST00000542238 MRPS36P82909 103 aaKnown RBP9.27□□□□□ -0.93
RTN3-211ENST00000542238 D6R8Y8 96 aa9.26□□□□□ -0.93
RTN3-211ENST00000542238 K7EMI3 77 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 TNFRSF6BO95407 300 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 BATFQ16520 125 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 FAM104AQ969W3 186 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 PRELID3AQ96N28 172 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 SMIM2Q9BVW6 85 aa9.25□□□□□ -0.93
RTN3-211ENST00000542238 TRBV30A0A0K0K1B3 111 aa9.24□□□□□ -0.93
RTN3-211ENST00000542238 PET117Q6UWS5 81 aa9.24□□□□□ -0.93
RTN3-211ENST00000542238 SYS1-DBNDD2H3BUS1 97 aa9.23□□□□□ -0.93
RTN3-211ENST00000542238 NPSP0C0P6 89 aa9.23□□□□□ -0.93
RTN3-211ENST00000542238 KRTAP7-1Q8IUC3 87 aa9.23□□□□□ -0.93
RTN3-211ENST00000542238 MUC2Q02817 5179 aa9.22□□□□□ -0.93
RTN3-211ENST00000542238 NDUFC2-KCTD14E9PQ53 114 aa9.22□□□□□ -0.93
RTN3-211ENST00000542238 NPYP01303 97 aa9.22□□□□□ -0.93
RTN3-211ENST00000542238 IFI27P40305 119 aaPredicted RBP9.22□□□□□ -0.93
RTN3-211ENST00000542238 KIAA0087Q14695 138 aa9.22□□□□□ -0.93
RTN3-211ENST00000542238 HSPB8Q9UJY1 196 aa9.22□□□□□ -0.93
RTN3-211ENST00000542238 LEPROTL1O95214 131 aa9.21□□□□□ -0.94
RTN3-211ENST00000542238 ATOH7Q8N100 152 aa9.21□□□□□ -0.94
RTN3-211ENST00000542238 MAP1LC3AQ9H492 121 aa9.21□□□□□ -0.94
RTN3-211ENST00000542238 LINC01546A6NGU7 62 aa9.2□□□□□ -0.94
RTN3-211ENST00000542238 ZNF861PO60384 105 aa9.2□□□□□ -0.94
RTN3-211ENST00000542238 C9orf129Q5T035 196 aaKnown RBP9.2□□□□□ -0.94
RTN3-211ENST00000542238 C2orf82Q6UX34 121 aa9.2□□□□□ -0.94
RTN3-211ENST00000542238 NXT2Q9NPJ8 142 aaKnown RBP9.2□□□□□ -0.94
RTN3-211ENST00000542238 LINC00242Q5T6M2 205 aa9.19□□□□□ -0.94
RTN3-211ENST00000542238 LINC01545Q5VT33 79 aa9.19□□□□□ -0.94
RTN3-211ENST00000542238 MAP1LC3CQ9BXW4 147 aa9.19□□□□□ -0.94
RTN3-211ENST00000542238 HSBP1L1C9JCN9 74 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 LINC00173Q6ZV60 143 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 Q8N8P6 123 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 PMCHL2Q9BQD1 86 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 PYGO1Q9Y3Y4 419 aa9.18□□□□□ -0.94
RTN3-211ENST00000542238 LINC01549A6NIU2 74 aa9.17□□□□□ -0.94
RTN3-211ENST00000542238 TSPAN13O95857 204 aa9.17□□□□□ -0.94
RTN3-211ENST00000542238 PRSS2P07478 247 aa9.17□□□□□ -0.94
RTN3-211ENST00000542238 HINT1P49773 126 aaPredicted RBP9.17□□□□□ -0.94
RTN3-211ENST00000542238 SLC25A34Q6PIV7 304 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms