RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MRGPRG-AS1Q2M3A8 158 aa6.24□□□□□ -1.41
YBX3-208ENST00000540447 CDSNQ15517 529 aa6.23□□□□□ -1.41
YBX3-208ENST00000540447 C14orf177Q52M58 125 aa6.23□□□□□ -1.41
YBX3-208ENST00000540447 IGLV5-39A0A0G2JS06 123 aa6.23□□□□□ -1.41
YBX3-208ENST00000540447 BBC3Q96PG8 261 aaPredicted RBP6.23□□□□□ -1.41
YBX3-208ENST00000540447 DEFB114Q30KQ6 69 aa6.22□□□□□ -1.41
YBX3-208ENST00000540447 COA5Q86WW8 74 aa6.22□□□□□ -1.41
YBX3-208ENST00000540447 IGLV4-60A0A075B6I1 120 aa6.21□□□□□ -1.41
YBX3-208ENST00000540447 EGFEM1PQ0D2K5 195 aa6.21□□□□□ -1.41
YBX3-208ENST00000540447 KIF26AQ9ULI4 1882 aaPredicted RBP6.21□□□□□ -1.41
YBX3-208ENST00000540447 CEP192Q8TEP8 1941 aa6.21□□□□□ -1.42
YBX3-208ENST00000540447 COL4A6Q14031 1691 aa6.21□□□□□ -1.42
YBX3-208ENST00000540447 C6orf223Q8N319 242 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 C6orf48Q9UBA6 75 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 BRWD3Q6RI45 1802 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 Q5XG85 94 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 SSBP3-AS1Q7Z2R9 100 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 TP53AIP1Q9HCN2 124 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 COL5A1P20908 1838 aaPredicted RBP6.2□□□□□ -1.42
YBX3-208ENST00000540447 LINC01006Q8NI28 216 aa6.2□□□□□ -1.42
YBX3-208ENST00000540447 LTBP1Q14766 1721 aa6.19□□□□□ -1.42
YBX3-208ENST00000540447 WNK1Q9H4A3 2382 aa6.19□□□□□ -1.42
YBX3-208ENST00000540447 LELP1Q5T871 98 aa6.19□□□□□ -1.42
YBX3-208ENST00000540447 Q9BRP9 147 aa6.19□□□□□ -1.42
YBX3-208ENST00000540447 A0A1B0GW54 56 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 C11orf72Q8NBR9 251 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 X6R8D5 127 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 PCNX1Q96RV3 2341 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 REG3GQ6UW15 175 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 ELOF1P60002 83 aaKnown RBP6.18□□□□□ -1.42
YBX3-208ENST00000540447 KIAA0087Q14695 138 aa6.18□□□□□ -1.42
YBX3-208ENST00000540447 C19orf84I3L1E1 186 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 CNOT1A5YKK6 2376 aaKnown RBP6.17□□□□□ -1.42
YBX3-208ENST00000540447 KIF25-AS1Q9Y6Z4 181 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 TECTAO75443 2155 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 ZNF702PQ9H963 129 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 PRLHP81277 87 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 NOTCH4Q99466 2003 aa6.17□□□□□ -1.42
YBX3-208ENST00000540447 IGLV8-61A0A075B6I0 122 aa6.16□□□□□ -1.42
YBX3-208ENST00000540447 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.16□□□□□ -1.42
YBX3-208ENST00000540447 CDC42SE1Q9NRR8 79 aa6.16□□□□□ -1.42
YBX3-208ENST00000540447 UQCR11O14957 56 aa6.16□□□□□ -1.42
YBX3-208ENST00000540447 Q6ZSN1 163 aa6.16□□□□□ -1.42
YBX3-208ENST00000540447 KIAA1549LQ6ZVL6 1849 aa6.15□□□□□ -1.42
YBX3-208ENST00000540447 IGFL2Q6UWQ7 119 aa6.15□□□□□ -1.42
YBX3-208ENST00000540447 LITAFQ99732 161 aa6.15□□□□□ -1.43
YBX3-208ENST00000540447 GOLGB1Q14789 3259 aaKnown RBP6.14□□□□□ -1.43
YBX3-208ENST00000540447 NAV3Q8IVL0 2385 aa6.14□□□□□ -1.43
YBX3-208ENST00000540447 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.14□□□□□ -1.43
YBX3-208ENST00000540447 MIR22HGQ0VDD5 57 aa6.14□□□□□ -1.43
YBX3-208ENST00000540447 IGLV5-45A0A087WSX0 123 aa6.14□□□□□ -1.43
YBX3-208ENST00000540447 Q1T7F1 81 aa6.13□□□□□ -1.43
YBX3-208ENST00000540447 LINC01554Q52M75 96 aa6.12□□□□□ -1.43
YBX3-208ENST00000540447 LINC01600Q96MT4 127 aa6.12□□□□□ -1.43
YBX3-208ENST00000540447 ACACAQ13085 2346 aa6.12□□□□□ -1.43
YBX3-208ENST00000540447 C2CD3Q4AC94 2353 aa6.12□□□□□ -1.43
YBX3-208ENST00000540447 C11orf45Q8TAV5 145 aa6.12□□□□□ -1.43
YBX3-208ENST00000540447 LINC00315P59091 139 aa6.11□□□□□ -1.43
YBX3-208ENST00000540447 Q8NBF4 154 aa6.11□□□□□ -1.43
YBX3-208ENST00000540447 C10orf99Q6UWK7 81 aa6.11□□□□□ -1.43
YBX3-208ENST00000540447 TRBV7-4A0A0J9YYF1 115 aa6.1□□□□□ -1.43
YBX3-208ENST00000540447 DEFB131BA0A096LNP1 70 aa6.1□□□□□ -1.43
YBX3-208ENST00000540447 PTPRBP23467 1997 aa6.1□□□□□ -1.43
YBX3-208ENST00000540447 A0A1B0GUV1 79 aa6.1□□□□□ -1.43
YBX3-208ENST00000540447 LMO4P61968 165 aa6.1□□□□□ -1.43
YBX3-208ENST00000540447 DSCAMO60469 2012 aa6.09□□□□□ -1.43
YBX3-208ENST00000540447 IGKV2D-30A0A075B6S6 120 aa6.09□□□□□ -1.43
YBX3-208ENST00000540447 IGKV2-30P06310 120 aa6.09□□□□□ -1.43
YBX3-208ENST00000540447 THSD7BQ9C0I4 1608 aa6.09□□□□□ -1.43
YBX3-208ENST00000540447 IGHV3OR16-9A0A0B4J2B5 98 aa6.09□□□□□ -1.43
YBX3-208ENST00000540447 WISP2O76076 250 aa6.09□□□□□ -1.44
YBX3-208ENST00000540447 CIRBP-AS1Q8TBR5 109 aa6.08□□□□□ -1.44
YBX3-208ENST00000540447 IGLV1-40P01703 118 aa6.07□□□□□ -1.44
YBX3-208ENST00000540447 K7EQZ3 153 aa6.07□□□□□ -1.44
YBX3-208ENST00000540447 PTPRSQ13332 1948 aa6.07□□□□□ -1.44
YBX3-208ENST00000540447 FP248Q71RG6 208 aaPredicted RBP6.06□□□□□ -1.44
YBX3-208ENST00000540447 RPL37AP61513 92 aaKnown RBP6.06□□□□□ -1.44
YBX3-208ENST00000540447 NBASA2RRP1 2371 aa6.05□□□□□ -1.44
YBX3-208ENST00000540447 Q6ZRU5 148 aa6.04□□□□□ -1.44
YBX3-208ENST00000540447 Q6YL49 198 aa6.04□□□□□ -1.44
YBX3-208ENST00000540447 ADAMTS20P59510 1910 aa6.04□□□□□ -1.44
YBX3-208ENST00000540447 LYPD5Q6UWN5 251 aa6.03□□□□□ -1.44
YBX3-208ENST00000540447 LINC00476Q8WZB0 136 aa6.03□□□□□ -1.44
YBX3-208ENST00000540447 CRIPTQ9P021 101 aa6.03□□□□□ -1.44
YBX3-208ENST00000540447 C7orf33Q8WU49 177 aa6.03□□□□□ -1.44
YBX3-208ENST00000540447 UTRNP46939 3433 aa6.03□□□□□ -1.44
YBX3-208ENST00000540447 ADORA2A-AS1P86434 159 aa6.02□□□□□ -1.45
YBX3-208ENST00000540447 TET2Q6N021 2002 aaPredicted RBP6.02□□□□□ -1.45
YBX3-208ENST00000540447 CSPG4Q6UVK1 2322 aa6.02□□□□□ -1.45
YBX3-208ENST00000540447 C18orf65Q6ZTR6 163 aa6.02□□□□□ -1.45
YBX3-208ENST00000540447 SPANXA2-OT1Q8N9U9 137 aa6.02□□□□□ -1.45
YBX3-208ENST00000540447 EIF4EBP3O60516 100 aaPredicted RBP6.01□□□□□ -1.45
YBX3-208ENST00000540447 ODF3L2Q3SX64 289 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 FAM229BQ4G0N7 80 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 LY6G6DO95868 133 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 DEFB113Q30KQ7 82 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 CYSTM1Q9H1C7 97 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 A8MWP4 228 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 FBXL19-AS1Q494R0 122 aa6.01□□□□□ -1.45
YBX3-208ENST00000540447 C22orf24Q9Y442 160 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms