RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 IGKV3-15P01624 115 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 IGLV2-23P01705 113 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 IGHV3-23P01764 117 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 KRTAP1-4P0C5Y4 121 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 C17orf58Q2M2W7 97 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 WFDC10AQ9H1F0 79 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 IGHV3-15A0A0B4J1V0 119 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 K7EIM0 57 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 NDPQ00604 133 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 C1orf134Q5TEV5 83 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 CNEP1R1Q8N9A8 125 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 Q8NAQ8 132 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 Q8NDZ9 215 aa3.58□□□□□ -1.84
CD44-231ENST00000531110 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.57□□□□□ -1.84
CD44-231ENST00000531110 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.57□□□□□ -1.84
CD44-231ENST00000531110 IGHV3-21A0A0B4J1V1 117 aa3.57□□□□□ -1.84
CD44-231ENST00000531110 IGHV1-2P23083 117 aa3.57□□□□□ -1.84
CD44-231ENST00000531110 PRR14LQ5THK1 2151 aa3.57□□□□□ -1.84
CD44-231ENST00000531110 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.57□□□□□ -1.84
CD44-231ENST00000531110 Q6ZTI0 123 aa3.57□□□□□ -1.84
CD44-231ENST00000531110 DOCK10Q96BY6 2186 aa3.57□□□□□ -1.84
CD44-231ENST00000531110 A0A1W2PNM2 257 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 DEFB108AA8MXU0 73 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 H0Y9P7 68 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 MGPP08493 103 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 RNASE3P12724 160 aaKnown RBP3.56□□□□□ -1.84
CD44-231ENST00000531110 SPATA8Q6RVD6 105 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 LINC00575Q6W349 94 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 Q8TAT8 98 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 CADP27708 2225 aa3.56□□□□□ -1.84
CD44-231ENST00000531110 IGHV3-64A0A075B6Q5 118 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 LRCOL1A6NCL2 159 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 B4DSR2 109 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 IGHV3-11P01762 117 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 SPAG11BQ08648 103 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 SPAG11AQ6PDA7 123 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 CDKN2A-AS1Q9UH64 79 aa3.55□□□□□ -1.84
CD44-231ENST00000531110 KIAA0100Q14667 2235 aaKnown RBP3.55□□□□□ -1.84
CD44-231ENST00000531110 DNAJC13O75165 2243 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 IGLV4-60A0A075B6I1 120 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 IGHV3-74A0A0B4J1X5 117 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 IGHV3-66A0A0C4DH42 116 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 MRPL33O75394 65 aaKnown RBP3.54□□□□□ -1.84
CD44-231ENST00000531110 IGLV1-47P01700 117 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 COX17Q14061 63 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 CASC10Q5T4H9 136 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 C9orf163Q8N9P6 203 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 GAFA1Q96PS6 74 aa3.54□□□□□ -1.84
CD44-231ENST00000531110 IGLV10-54A0A075B6I4 117 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 CLPSL1A2RUU4 121 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 CCL18P55774 89 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 RNASE13Q5GAN3 156 aaKnown RBP3.53□□□□□ -1.84
CD44-231ENST00000531110 C1orf137Q5JT78 98 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 CXCL17Q6UXB2 119 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 RTTNQ86VV8 2226 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 CR1P17927 2039 aa3.53□□□□□ -1.84
CD44-231ENST00000531110 F5P12259 2224 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 RP1P56715 2156 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 IGLV11-55A0A075B6I3 123 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 TRGV4A0A0C4DH28 118 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 IGHV3-64DA0A0J9YX35 117 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 DNAH10OSP0CZ25 163 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 FDCSPQ8NFU4 85 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 SPRR4Q96PI1 79 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 TTTY12Q9BZ98 90 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 SDK2Q58EX2 2172 aa3.52□□□□□ -1.85
CD44-231ENST00000531110 A0A096LNT2 108 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 K7ERS5 55 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 MIR22HGQ0VDD5 57 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 COA5Q86WW8 74 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 CAMK2N2Q96S95 79 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 CHCHD7Q9BUK0 85 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 DPM3Q9P2X0 92 aa3.51□□□□□ -1.85
CD44-231ENST00000531110 FAM168BA1KXE4 195 aa3.5□□□□□ -1.85
CD44-231ENST00000531110 UQCR11O14957 56 aa3.5□□□□□ -1.85
CD44-231ENST00000531110 CHTF8P0CG12 524 aa3.5□□□□□ -1.85
CD44-231ENST00000531110 LINC00158P58513 81 aa3.5□□□□□ -1.85
CD44-231ENST00000531110 DHRS4-AS1Q9P1J3 65 aa3.5□□□□□ -1.85
CD44-231ENST00000531110 IGLV1-50A0A075B6I6 118 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 DEFB131BA0A096LNP1 70 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 KRTAP4-16G5E9R7 235 aaPredicted RBP3.49□□□□□ -1.85
CD44-231ENST00000531110 CD52P31358 61 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 SPINK7P58062 85 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 PRR4Q16378 134 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 LINC01006Q8NI28 216 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 DMAC1Q96GE9 116 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 CCL26Q9Y258 94 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 NAV3Q8IVL0 2385 aa3.49□□□□□ -1.85
CD44-231ENST00000531110 COX7A1P24310 79 aa3.48□□□□□ -1.85
CD44-231ENST00000531110 C10orf55Q5SWW7 151 aa3.48□□□□□ -1.85
CD44-231ENST00000531110 CSAG1Q6PB30 78 aa3.48□□□□□ -1.85
CD44-231ENST00000531110 Q6ZQY7 126 aa3.48□□□□□ -1.85
CD44-231ENST00000531110 SVILO95425 2214 aa3.48□□□□□ -1.85
CD44-231ENST00000531110 PRRC2BQ5JSZ5 2229 aaKnown RBP3.48□□□□□ -1.85
CD44-231ENST00000531110 ZNF318Q5VUA4 2279 aa3.47□□□□□ -1.85
CD44-231ENST00000531110 IGHV1-46P01743 117 aa3.47□□□□□ -1.85
CD44-231ENST00000531110 KRTAP25-1Q3LHN0 102 aa3.47□□□□□ -1.85
CD44-231ENST00000531110 LEAP2Q969E1 77 aa3.47□□□□□ -1.85
CD44-231ENST00000531110 IGLV5-48A0A075B6I7 105 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 182.8 ms