RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CEND1Q8N111 149 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 LITAFQ99732 161 aa13.97□□□□□ -0.17
VPS28-208ENST00000527797 ZNF561-AS1K7EIQ3 104 aa13.94□□□□□ -0.18
VPS28-208ENST00000527797 ADAMTSL4-AS1Q5T5F5 129 aa13.94□□□□□ -0.18
VPS28-208ENST00000527797 C15orf56Q8N910 161 aa13.94□□□□□ -0.18
VPS28-208ENST00000527797 HIGD2BQ4VC39 106 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 NTN5Q8WTR8 489 aaPredicted RBP13.93□□□□□ -0.18
VPS28-208ENST00000527797 SPANXDQ9BXN6 97 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 SPANXCQ9NY87 97 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 CSMD3Q7Z407 3707 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 DNAH7Q8WXX0 4024 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 Q6ZVH6 145 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 C6orf223Q8N319 242 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 LINC00526Q96FQ7 95 aa13.93□□□□□ -0.18
VPS28-208ENST00000527797 A0A0U1RRA0 63 aa13.92□□□□□ -0.18
VPS28-208ENST00000527797 SMIM13P0DJ93 91 aa13.92□□□□□ -0.18
VPS28-208ENST00000527797 PTTG1IPP53801 180 aa13.91□□□□□ -0.18
VPS28-208ENST00000527797 GVQW2A0A096LPI5 108 aaPredicted RBP13.9□□□□□ -0.18
VPS28-208ENST00000527797 FXYD2P54710 66 aa13.9□□□□□ -0.18
VPS28-208ENST00000527797 ERG28Q9UKR5 140 aa13.9□□□□□ -0.18
VPS28-208ENST00000527797 LINC00158P58513 81 aa13.9□□□□□ -0.19
VPS28-208ENST00000527797 UNQ6190/PRO20217Q6UXQ8 127 aa13.9□□□□□ -0.19
VPS28-208ENST00000527797 USP17L23D6RBM5 183 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 PSCAO43653 123 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 LY6G6CO95867 125 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 MUSTN1Q8IVN3 82 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 DAND5Q8N907 189 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 C2orf48Q96LS8 159 aa13.89□□□□□ -0.19
VPS28-208ENST00000527797 F8WDY8 70 aa13.88□□□□□ -0.19
VPS28-208ENST00000527797 PFN2P35080 140 aa13.88□□□□□ -0.19
VPS28-208ENST00000527797 C10orf25Q5T742 122 aa13.88□□□□□ -0.19
VPS28-208ENST00000527797 CAMK2N2Q96S95 79 aa13.88□□□□□ -0.19
VPS28-208ENST00000527797 STARD9Q9P2P6 4700 aa13.88□□□□□ -0.19
VPS28-208ENST00000527797 A6NDN8 102 aa13.87□□□□□ -0.19
VPS28-208ENST00000527797 M0R2N4 97 aa13.87□□□□□ -0.19
VPS28-208ENST00000527797 IFITM1P13164 125 aa13.87□□□□□ -0.19
VPS28-208ENST00000527797 LBHQ53QV2 105 aaPredicted RBP13.87□□□□□ -0.19
VPS28-208ENST00000527797 COL5A1-AS1Q5SY13 56 aa13.87□□□□□ -0.19
VPS28-208ENST00000527797 TGP01266 2768 aa13.87□□□□□ -0.19
VPS28-208ENST00000527797 RPL24P83731 157 aaKnown RBP13.86□□□□□ -0.19
VPS28-208ENST00000527797 TMEM238LA0A1B0GVL6 79 aa13.86□□□□□ -0.19
VPS28-208ENST00000527797 A6NJY4 79 aa13.86□□□□□ -0.19
VPS28-208ENST00000527797 COX17Q14061 63 aa13.86□□□□□ -0.19
VPS28-208ENST00000527797 COPS9Q8WXC6 57 aa13.86□□□□□ -0.19
VPS28-208ENST00000527797 LINC00476Q8WZB0 136 aa13.86□□□□□ -0.19
VPS28-208ENST00000527797 NPC2P61916 151 aa13.85□□□□□ -0.19
VPS28-208ENST00000527797 MIR7-3HGQ8N6C7 128 aa13.85□□□□□ -0.19
VPS28-208ENST00000527797 PLECQ15149 4684 aaKnown RBP13.85□□□□□ -0.19
VPS28-208ENST00000527797 LINC00308Q8TCZ7 52 aa13.84□□□□□ -0.19
VPS28-208ENST00000527797 TRBV30A0A0K0K1B3 111 aa13.83□□□□□ -0.2
VPS28-208ENST00000527797 C9orf116Q5BN46 136 aaPredicted RBP13.83□□□□□ -0.2
VPS28-208ENST00000527797 TENM2Q9NT68 2774 aa13.83□□□□□ -0.2
VPS28-208ENST00000527797 LECT2O14960 151 aa13.82□□□□□ -0.2
VPS28-208ENST00000527797 Q6ZR54 194 aa13.82□□□□□ -0.2
VPS28-208ENST00000527797 NHP2Q9NX24 153 aaKnown RBP13.82□□□□□ -0.2
VPS28-208ENST00000527797 C6orf48Q9UBA6 75 aa13.82□□□□□ -0.2
VPS28-208ENST00000527797 Q6ZRU5 148 aa13.82□□□□□ -0.2
VPS28-208ENST00000527797 A4D1N5 150 aa13.81□□□□□ -0.2
VPS28-208ENST00000527797 SYCNQ0VAF6 134 aa13.81□□□□□ -0.2
VPS28-208ENST00000527797 Q6ZRN7 208 aaPredicted RBP13.79□□□□□ -0.2
VPS28-208ENST00000527797 PPDPFQ9H3Y8 114 aa13.79□□□□□ -0.2
VPS28-208ENST00000527797 EIF4EBP3O60516 100 aaPredicted RBP13.79□□□□□ -0.2
VPS28-208ENST00000527797 SOSTDC1Q6X4U4 206 aa13.79□□□□□ -0.2
VPS28-208ENST00000527797 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.78□□□□□ -0.2
VPS28-208ENST00000527797 A0A1B0GWB2 263 aa13.77□□□□□ -0.21
VPS28-208ENST00000527797 WFDC2Q14508 124 aa13.77□□□□□ -0.21
VPS28-208ENST00000527797 C14orf177Q52M58 125 aa13.77□□□□□ -0.21
VPS28-208ENST00000527797 K7ERJ3 54 aa13.76□□□□□ -0.21
VPS28-208ENST00000527797 CARD19Q96LW7 228 aa13.76□□□□□ -0.21
VPS28-208ENST00000527797 CFC1BP0CG36 223 aa13.75□□□□□ -0.21
VPS28-208ENST00000527797 CFC1P0CG37 223 aa13.75□□□□□ -0.21
VPS28-208ENST00000527797 SLPIP03973 132 aa13.75□□□□□ -0.21
VPS28-208ENST00000527797 RNF151Q2KHN1 245 aa13.75□□□□□ -0.21
VPS28-208ENST00000527797 TAX1BP3O14907 124 aa13.73□□□□□ -0.21
VPS28-208ENST00000527797 C1orf134Q5TEV5 83 aa13.73□□□□□ -0.21
VPS28-208ENST00000527797 RAB37Q96AX2 223 aa13.73□□□□□ -0.21
VPS28-208ENST00000527797 LYSTQ99698 3801 aa13.73□□□□□ -0.21
VPS28-208ENST00000527797 A0A0B4J2C4 111 aa13.72□□□□□ -0.21
VPS28-208ENST00000527797 LOC107984156A0A0G2JMH3 177 aa13.72□□□□□ -0.21
VPS28-208ENST00000527797 LRCOL1A6NCL2 159 aa13.72□□□□□ -0.21
VPS28-208ENST00000527797 ARL17AQ8IVW1 177 aa13.72□□□□□ -0.21
VPS28-208ENST00000527797 SND1-IT1Q9HBX3 110 aa13.72□□□□□ -0.21
VPS28-208ENST00000527797 DNAH1Q9P2D7 4330 aa13.71□□□□□ -0.21
VPS28-208ENST00000527797 NDUFC2-KCTD14E9PQ53 114 aa13.71□□□□□ -0.22
VPS28-208ENST00000527797 VPS13DQ5THJ4 4388 aa13.7□□□□□ -0.22
VPS28-208ENST00000527797 PRO1854Q9UHT4 67 aa13.69□□□□□ -0.22
VPS28-208ENST00000527797 CNBPP62633 177 aaKnown RBP13.68□□□□□ -0.22
VPS28-208ENST00000527797 TLX1NBP0CAT3 122 aa13.67□□□□□ -0.22
VPS28-208ENST00000527797 C9orf118A6NHY6 69 aa13.66□□□□□ -0.22
VPS28-208ENST00000527797 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.65□□□□□ -0.22
VPS28-208ENST00000527797 Q6ZRP5 223 aa13.65□□□□□ -0.22
VPS28-208ENST00000527797 GAGE2EQ4V326 116 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 XAGE1AQ9HD64 81 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 PGPEP1Q9NXJ5 209 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 GAGE2DQ9UEU5 116 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 A0A087WTM6 91 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 NDUFC2O95298 119 aa13.64□□□□□ -0.23
VPS28-208ENST00000527797 A0A1B0GV90 55 aa13.63□□□□□ -0.23
VPS28-208ENST00000527797 H3BUT2 72 aa13.63□□□□□ -0.23
VPS28-208ENST00000527797 RPL18AQ02543 176 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms