RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 WFDC10BQ8IUB3 73 aa12.8□□□□□ -0.36
VPS28-207ENST00000526977 LINC00588Q9Y4M8 146 aa12.8□□□□□ -0.36
VPS28-207ENST00000526977 A0A0U1RRA0 63 aa12.79□□□□□ -0.36
VPS28-207ENST00000526977 H3BMG7 143 aa12.79□□□□□ -0.36
VPS28-207ENST00000526977 SFTA2Q6UW10 78 aa12.79□□□□□ -0.36
VPS28-207ENST00000526977 IGHV3-33P01772 117 aa12.79□□□□□ -0.36
VPS28-207ENST00000526977 MEIG1Q5JSS6 88 aa12.78□□□□□ -0.36
VPS28-207ENST00000526977 LINC00308Q8TCZ7 52 aa12.78□□□□□ -0.36
VPS28-207ENST00000526977 WWC2-AS2Q96NR7 200 aa12.78□□□□□ -0.36
VPS28-207ENST00000526977 UPK3BQ9BT76 320 aa12.78□□□□□ -0.36
VPS28-207ENST00000526977 LOC107984156A0A0G2JMH3 177 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 OCIAD2Q56VL3 154 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 LINC01556Q5JQF7 62 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 CD164L2Q6UWJ8 174 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 ARL17AQ8IVW1 177 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 LINC01561Q8N1V8 128 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 MUC7Q8TAX7 377 aa12.77□□□□□ -0.37
VPS28-207ENST00000526977 CHCHD10Q8WYQ3 142 aaPredicted RBP12.77□□□□□ -0.37
VPS28-207ENST00000526977 ERG28Q9UKR5 140 aa12.76□□□□□ -0.37
VPS28-207ENST00000526977 IGLV10-54A0A075B6I4 117 aa12.76□□□□□ -0.37
VPS28-207ENST00000526977 DNAH10OSP0CZ25 163 aa12.75□□□□□ -0.37
VPS28-207ENST00000526977 DNAH7Q8WXX0 4024 aa12.74□□□□□ -0.37
VPS28-207ENST00000526977 SOSTDC1Q6X4U4 206 aa12.74□□□□□ -0.37
VPS28-207ENST00000526977 F8W1H4 67 aa12.74□□□□□ -0.37
VPS28-207ENST00000526977 C6orf226Q5I0X4 101 aa12.74□□□□□ -0.37
VPS28-207ENST00000526977 KLK12Q9UKR0 248 aa12.74□□□□□ -0.37
VPS28-207ENST00000526977 DYNC2H1Q8NCM8 4307 aaKnown RBP12.73□□□□□ -0.37
VPS28-207ENST00000526977 H7C2G1 150 aa12.73□□□□□ -0.37
VPS28-207ENST00000526977 PRR34Q9NV39 138 aa12.73□□□□□ -0.37
VPS28-207ENST00000526977 CSMD3Q7Z407 3707 aa12.73□□□□□ -0.37
VPS28-207ENST00000526977 COX7A2LO14548 114 aa12.72□□□□□ -0.37
VPS28-207ENST00000526977 PRO0461Q9UI25 63 aa12.72□□□□□ -0.37
VPS28-207ENST00000526977 WFDC2Q14508 124 aa12.72□□□□□ -0.37
VPS28-207ENST00000526977 PSMB2P49721 201 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 FOXI1Q12951 378 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 LYRM7Q5U5X0 104 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 ENHOQ6UWT2 76 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 UBE2DNLQ8IWF7 75 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 Q8IZM0 81 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 COPS9Q8WXC6 57 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 TGP01266 2768 aa12.71□□□□□ -0.37
VPS28-207ENST00000526977 TCL1BO95988 128 aa12.7□□□□□ -0.38
VPS28-207ENST00000526977 IBA57-AS1B1ANH7 110 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 CRPP02741 224 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 SCGB1C2P0DMR2 95 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 MTURNQ8N3F0 131 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 KIAA0087Q14695 138 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 MIR7-3HGQ8N6C7 128 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 PPDPFQ9H3Y8 114 aa12.69□□□□□ -0.38
VPS28-207ENST00000526977 TRBV20-1A0A075B6N2 111 aa12.68□□□□□ -0.38
VPS28-207ENST00000526977 LINC00158P58513 81 aa12.68□□□□□ -0.38
VPS28-207ENST00000526977 TRAV8-4A0A0B4J246 113 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 GAGE12HA6NDE8 117 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 MALP21145 153 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 Q1RN00 199 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 UBE2WQ96B02 151 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 C2orf82Q6UX34 121 aa12.67□□□□□ -0.38
VPS28-207ENST00000526977 K7ERU9 68 aa12.66□□□□□ -0.38
VPS28-207ENST00000526977 TRBV30A0A0K0K1B3 111 aa12.66□□□□□ -0.38
VPS28-207ENST00000526977 PFN2P35080 140 aa12.66□□□□□ -0.38
VPS28-207ENST00000526977 RPL13AP40429 203 aaKnown RBP12.64□□□□□ -0.39
VPS28-207ENST00000526977 SMCPP49901 116 aaPredicted RBP12.64□□□□□ -0.39
VPS28-207ENST00000526977 CKS1BP61024 79 aa12.64□□□□□ -0.39
VPS28-207ENST00000526977 C3orf84H3BNL1 204 aa12.64□□□□□ -0.39
VPS28-207ENST00000526977 TRIAP1O43715 76 aa12.64□□□□□ -0.39
VPS28-207ENST00000526977 STARD9Q9P2P6 4700 aa12.64□□□□□ -0.39
VPS28-207ENST00000526977 PLECQ15149 4684 aaKnown RBP12.63□□□□□ -0.39
VPS28-207ENST00000526977 ETDBQ3ZM63 59 aa12.62□□□□□ -0.39
VPS28-207ENST00000526977 CFAP161Q6P656 301 aa12.62□□□□□ -0.39
VPS28-207ENST00000526977 RNF151Q2KHN1 245 aa12.62□□□□□ -0.39
VPS28-207ENST00000526977 CASC10Q5T4H9 136 aa12.62□□□□□ -0.39
VPS28-207ENST00000526977 CXCL5P42830 114 aa12.61□□□□□ -0.39
VPS28-207ENST00000526977 SND1-IT1Q9HBX3 110 aa12.6□□□□□ -0.39
VPS28-207ENST00000526977 TENM2Q9NT68 2774 aa12.6□□□□□ -0.39
VPS28-207ENST00000526977 C1orf43Q9BWL3 253 aa12.59□□□□□ -0.39
VPS28-207ENST00000526977 IGKV2-28A0A075B6P5 120 aa12.57□□□□□ -0.4
VPS28-207ENST00000526977 IGKV2D-28P01615 120 aa12.57□□□□□ -0.4
VPS28-207ENST00000526977 KRTAP26-1Q6PEX3 210 aa12.57□□□□□ -0.4
VPS28-207ENST00000526977 C6orf223Q8N319 242 aa12.57□□□□□ -0.4
VPS28-207ENST00000526977 SPAG11BQ08648 103 aa12.57□□□□□ -0.4
VPS28-207ENST00000526977 COX6CP09669 75 aa12.56□□□□□ -0.4
VPS28-207ENST00000526977 COX17Q14061 63 aa12.56□□□□□ -0.4
VPS28-207ENST00000526977 TTC32Q5I0X7 151 aa12.56□□□□□ -0.4
VPS28-207ENST00000526977 RMI2Q96E14 147 aa12.56□□□□□ -0.4
VPS28-207ENST00000526977 LYSTQ99698 3801 aa12.56□□□□□ -0.4
VPS28-207ENST00000526977 IGKV2D-24A0A075B6R9 120 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 ATXN8Q156A1 80 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 LINC00526Q96FQ7 95 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 Q9HAA7 133 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 C9orf116Q5BN46 136 aaPredicted RBP12.55□□□□□ -0.4
VPS28-207ENST00000526977 C10orf25Q5T742 122 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 UNQ6190/PRO20217Q6UXQ8 127 aa12.55□□□□□ -0.4
VPS28-207ENST00000526977 TRAV13-2A0A0B4J235 113 aa12.54□□□□□ -0.4
VPS28-207ENST00000526977 LINC00337Q8N6G1 96 aa12.54□□□□□ -0.4
VPS28-207ENST00000526977 NBDYA0A0U1RRE5 68 aa12.53□□□□□ -0.4
VPS28-207ENST00000526977 C9JAW5 83 aa12.53□□□□□ -0.4
VPS28-207ENST00000526977 VPS25Q9BRG1 176 aa12.53□□□□□ -0.4
VPS28-207ENST00000526977 LINC01620Q4KN68 170 aa12.52□□□□□ -0.4
VPS28-207ENST00000526977 CLEC2BQ92478 149 aa12.52□□□□□ -0.41
VPS28-207ENST00000526977 KRTAP1-5Q9BYS1 174 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 544.6 ms