RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 LINC01549A6NIU2 74 aa15.29■□□□□ 0.04
UPF3A-209ENST00000492270 Q8IZM0 81 aa15.29■□□□□ 0.04
UPF3A-209ENST00000492270 PACRGQ96M98 296 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-209ENST00000492270 LINC00469Q8N7U9 141 aa15.28■□□□□ 0.04
UPF3A-209ENST00000492270 CST9LQ9H4G1 147 aa15.28■□□□□ 0.04
UPF3A-209ENST00000492270 TINCRA0A1B0GVN0 87 aa15.27■□□□□ 0.04
UPF3A-209ENST00000492270 C6orf226Q5I0X4 101 aa15.27■□□□□ 0.04
UPF3A-209ENST00000492270 YPEL4Q96NS1 127 aa15.27■□□□□ 0.04
UPF3A-209ENST00000492270 CKS1BP61024 79 aa15.26■□□□□ 0.03
UPF3A-209ENST00000492270 FAM19A5Q7Z5A7 132 aaPredicted RBP15.26■□□□□ 0.03
UPF3A-209ENST00000492270 SMIM1B2RUZ4 78 aa15.25■□□□□ 0.03
UPF3A-209ENST00000492270 NDUFC2-KCTD14E9PQ53 114 aa15.25■□□□□ 0.03
UPF3A-209ENST00000492270 MT1HL1P0DM35 61 aa15.25■□□□□ 0.03
UPF3A-209ENST00000492270 PMVKQ15126 192 aa15.25■□□□□ 0.03
UPF3A-209ENST00000492270 PMCHL1Q16048 86 aa15.25■□□□□ 0.03
UPF3A-209ENST00000492270 IGLV5-45A0A087WSX0 123 aa15.24■□□□□ 0.03
UPF3A-209ENST00000492270 LINC00614P0C842 121 aa15.24■□□□□ 0.03
UPF3A-209ENST00000492270 KRTAP7-1Q8IUC3 87 aa15.24■□□□□ 0.03
UPF3A-209ENST00000492270 C9orf129Q5T035 196 aaKnown RBP15.23■□□□□ 0.03
UPF3A-209ENST00000492270 PSORS1C2Q9UIG4 136 aa15.23■□□□□ 0.03
UPF3A-209ENST00000492270 KRTAP11-1Q8IUC1 163 aa15.21■□□□□ 0.03
UPF3A-209ENST00000492270 HBDP02042 147 aa15.2■□□□□ 0.02
UPF3A-209ENST00000492270 SPINK8P0C7L1 97 aa15.2■□□□□ 0.02
UPF3A-209ENST00000492270 SRSF9Q13242 221 aaKnown RBP eCLIP15.2■□□□□ 0.02
UPF3A-209ENST00000492270 SPINK6Q6UWN8 80 aa15.2■□□□□ 0.02
UPF3A-209ENST00000492270 CBLN2Q8IUK8 224 aa15.2■□□□□ 0.02
UPF3A-209ENST00000492270 F8VRH5 84 aa15.19■□□□□ 0.02
UPF3A-209ENST00000492270 PDZD11Q5EBL8 140 aa15.19■□□□□ 0.02
UPF3A-209ENST00000492270 COX7B2Q8TF08 81 aa15.19■□□□□ 0.02
UPF3A-209ENST00000492270 NDUFA6P56556 154 aa15.18■□□□□ 0.02
UPF3A-209ENST00000492270 C1orf137Q5JT78 98 aa15.17■□□□□ 0.02
UPF3A-209ENST00000492270 M0QXV9 152 aa15.16■□□□□ 0.02
UPF3A-209ENST00000492270 IGLC3P0DOY3 106 aa15.16■□□□□ 0.02
UPF3A-209ENST00000492270 CXCL5P42830 114 aa15.16■□□□□ 0.02
UPF3A-209ENST00000492270 SLC7A5P1Q8MH63 180 aa15.16■□□□□ 0.02
UPF3A-209ENST00000492270 RAB5BP61020 215 aa15.15■□□□□ 0.02
UPF3A-209ENST00000492270 XAGE1AQ9HD64 81 aa15.15■□□□□ 0.02
UPF3A-209ENST00000492270 TNXBP22105 4242 aa15.14■□□□□ 0.01
UPF3A-209ENST00000492270 SERTAD4-AS1Q5TG53 156 aa15.13■□□□□ 0.01
UPF3A-209ENST00000492270 LINC01600Q96MT4 127 aa15.13■□□□□ 0.01
UPF3A-209ENST00000492270 ZNF22P17026 224 aaPredicted RBP15.12■□□□□ 0.01
UPF3A-209ENST00000492270 H3BRM9 83 aa15.11■□□□□ 0.01
UPF3A-209ENST00000492270 ATP5LO75964 103 aa15.1■□□□□ 0.01
UPF3A-209ENST00000492270 UBE2BP63146 152 aa15.09■□□□□ 0.01
UPF3A-209ENST00000492270 REG3GQ6UW15 175 aa15.09■□□□□ 0.01
UPF3A-209ENST00000492270 BAGE3Q86Y29 109 aa15.08■□□□□ 0
UPF3A-209ENST00000492270 IGLV5-39A0A0G2JS06 123 aa15.07■□□□□ 0
UPF3A-209ENST00000492270 C11orf86A6NJI1 115 aa15.07■□□□□ 0
UPF3A-209ENST00000492270 IGLV7-43P04211 117 aa15.07■□□□□ 0
UPF3A-209ENST00000492270 CHCHD1Q96BP2 118 aaKnown RBP15.07■□□□□ 0
UPF3A-209ENST00000492270 C22orf24Q9Y442 160 aa15.05■□□□□ -0
UPF3A-209ENST00000492270 HMCN2Q8NDA2 5059 aa15.05■□□□□ -0
UPF3A-209ENST00000492270 TRGC2P03986 189 aa15.04■□□□□ -0
UPF3A-209ENST00000492270 ODF1Q14990 250 aa15.04■□□□□ -0
UPF3A-209ENST00000492270 TMEM170BQ5T4T1 132 aa15.02■□□□□ -0
UPF3A-209ENST00000492270 CHTOPQ9Y3Y2 248 aaKnown RBP15.02■□□□□ -0
UPF3A-209ENST00000492270 FAM19A2Q8N3H0 131 aa15.01□□□□□ -0.01
UPF3A-209ENST00000492270 IFI27L1Q96BM0 104 aa15.01□□□□□ -0.01
UPF3A-209ENST00000492270 PLA2G2DQ9UNK4 145 aa15.01□□□□□ -0.01
UPF3A-209ENST00000492270 KRTAP10-8P60410 259 aa15□□□□□ -0.01
UPF3A-209ENST00000492270 HSBP1O75506 76 aa14.98□□□□□ -0.01
UPF3A-209ENST00000492270 LINC00310P59036 64 aa14.98□□□□□ -0.01
UPF3A-209ENST00000492270 TRAV12-1A0A0B4J245 112 aa14.97□□□□□ -0.01
UPF3A-209ENST00000492270 PFN2P35080 140 aa14.97□□□□□ -0.01
UPF3A-209ENST00000492270 DIRC1Q969H9 104 aa14.97□□□□□ -0.01
UPF3A-209ENST00000492270 H0Y9J4 135 aa14.96□□□□□ -0.01
UPF3A-209ENST00000492270 LBHQ53QV2 105 aaPredicted RBP14.96□□□□□ -0.01
UPF3A-209ENST00000492270 MRPL55Q7Z7F7 128 aaKnown RBP14.96□□□□□ -0.01
UPF3A-209ENST00000492270 ZNF625Q96I27 306 aaPredicted RBP14.96□□□□□ -0.01
UPF3A-209ENST00000492270 TP73-AS1Q9UF72 201 aa14.96□□□□□ -0.01
UPF3A-209ENST00000492270 COLCA2A8K830 154 aa14.94□□□□□ -0.02
UPF3A-209ENST00000492270 SERF1AO75920 110 aa14.94□□□□□ -0.02
UPF3A-209ENST00000492270 ERG28Q9UKR5 140 aa14.94□□□□□ -0.02
UPF3A-209ENST00000492270 TMEM223A0PJW6 202 aa14.92□□□□□ -0.02
UPF3A-209ENST00000492270 LINC00167Q96N53 147 aa14.92□□□□□ -0.02
UPF3A-209ENST00000492270 GAGE10A6NGK3 116 aa14.91□□□□□ -0.02
UPF3A-209ENST00000492270 IGLV5-37A0A075B6J1 123 aa14.9□□□□□ -0.02
UPF3A-209ENST00000492270 RPL37AP8A6NKH3 93 aa14.9□□□□□ -0.02
UPF3A-209ENST00000492270 H0Y8G0 127 aa14.9□□□□□ -0.02
UPF3A-209ENST00000492270 NUPR1O60356 82 aa14.9□□□□□ -0.02
UPF3A-209ENST00000492270 SCO1O75880 301 aa14.89□□□□□ -0.03
UPF3A-209ENST00000492270 SND1-IT1Q9HBX3 110 aa14.89□□□□□ -0.03
UPF3A-209ENST00000492270 LEPROTL1O95214 131 aa14.87□□□□□ -0.03
UPF3A-209ENST00000492270 PRR26Q8N8Z3 221 aa14.87□□□□□ -0.03
UPF3A-209ENST00000492270 NKAPP1Q8N9T2 125 aa14.87□□□□□ -0.03
UPF3A-209ENST00000492270 ZNF861PO60384 105 aa14.86□□□□□ -0.03
UPF3A-209ENST00000492270 KRTAP1-4P0C5Y4 121 aa14.86□□□□□ -0.03
UPF3A-209ENST00000492270 COX17Q14061 63 aa14.86□□□□□ -0.03
UPF3A-209ENST00000492270 SFTA2Q6UW10 78 aa14.85□□□□□ -0.03
UPF3A-209ENST00000492270 Q8NDZ9 215 aa14.84□□□□□ -0.03
UPF3A-209ENST00000492270 BCE1O60756 84 aa14.83□□□□□ -0.04
UPF3A-209ENST00000492270 VPREB1P12018 145 aa14.83□□□□□ -0.04
UPF3A-209ENST00000492270 FABP4P15090 132 aa14.82□□□□□ -0.04
UPF3A-209ENST00000492270 A0A0U1RRA0 63 aa14.81□□□□□ -0.04
UPF3A-209ENST00000492270 IGKV2-28A0A075B6P5 120 aa14.8□□□□□ -0.04
UPF3A-209ENST00000492270 IGKV2D-28P01615 120 aa14.8□□□□□ -0.04
UPF3A-209ENST00000492270 LINC00158P58513 81 aa14.8□□□□□ -0.04
UPF3A-209ENST00000492270 HSPB8Q9UJY1 196 aa14.78□□□□□ -0.04
UPF3A-209ENST00000492270 PMCHL2Q9BQD1 86 aa14.77□□□□□ -0.05
UPF3A-209ENST00000492270 IGLV1-50A0A075B6I6 118 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms