RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 PNRC1Q12796 327 aaPredicted RBP9.17□□□□□ -0.94
USP48-210ENST00000489108 FP248Q71RG6 208 aaPredicted RBP9.17□□□□□ -0.94
USP48-210ENST00000489108 SLC51BQ86UW2 128 aa9.17□□□□□ -0.94
USP48-210ENST00000489108 C3orf22Q8N5N4 141 aa9.17□□□□□ -0.94
USP48-210ENST00000489108 F8VRH5 84 aa9.16□□□□□ -0.94
USP48-210ENST00000489108 FAM74A3Q4VXF1 159 aa9.16□□□□□ -0.94
USP48-210ENST00000489108 C2orf88Q9BSF0 95 aa9.16□□□□□ -0.94
USP48-210ENST00000489108 BATF3Q9NR55 127 aa9.16□□□□□ -0.94
USP48-210ENST00000489108 SEC61BP60468 96 aaKnown RBP9.14□□□□□ -0.95
USP48-210ENST00000489108 PRLHP81277 87 aa9.14□□□□□ -0.95
USP48-210ENST00000489108 SMIM27A0A1W2PRY6 76 aa9.13□□□□□ -0.95
USP48-210ENST00000489108 LCE2CQ5TA81 110 aa9.13□□□□□ -0.95
USP48-210ENST00000489108 SPAG11AQ6PDA7 123 aa9.13□□□□□ -0.95
USP48-210ENST00000489108 AMELXQ99217 191 aa9.13□□□□□ -0.95
USP48-210ENST00000489108 VCX2Q9H322 139 aa9.13□□□□□ -0.95
USP48-210ENST00000489108 IGLV5-37A0A075B6J1 123 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 IGKV2-28A0A075B6P5 120 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 A0A1B0GW15 77 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 SCO1O75880 301 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 IGKV2D-28P01615 120 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 BLOC1S1P78537 153 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 C2orf66Q6UXQ4 117 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 NKAPP1Q8N9T2 125 aa9.12□□□□□ -0.95
USP48-210ENST00000489108 PLEKHB2Q96CS7 222 aa9.11□□□□□ -0.95
USP48-210ENST00000489108 CDKN2A-AS1Q9UH64 79 aa9.11□□□□□ -0.95
USP48-210ENST00000489108 F8W036 122 aa9.1□□□□□ -0.95
USP48-210ENST00000489108 PPBPP02775 128 aa9.1□□□□□ -0.95
USP48-210ENST00000489108 SRP19P09132 144 aaKnown RBP9.1□□□□□ -0.95
USP48-210ENST00000489108 MRPL54Q6P161 138 aaKnown RBP9.1□□□□□ -0.95
USP48-210ENST00000489108 FAM19A3Q7Z5A8 133 aa9.1□□□□□ -0.95
USP48-210ENST00000489108 FAM19A1Q7Z5A9 133 aa9.1□□□□□ -0.95
USP48-210ENST00000489108 TMEM136Q6ZRR5 245 aa9.09□□□□□ -0.95
USP48-210ENST00000489108 LOC389332A0A1B0GUA5 103 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 CXCL5P42830 114 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 RAB5BP61020 215 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 RPL23P62829 140 aaKnown RBP9.08□□□□□ -0.96
USP48-210ENST00000489108 C4orf48Q5BLP8 95 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 ALKAL2Q6UX46 152 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 ORMDL3Q8N138 153 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 PRELID3AQ96N28 172 aa9.08□□□□□ -0.96
USP48-210ENST00000489108 TMEM238C9JI98 176 aa9.07□□□□□ -0.96
USP48-210ENST00000489108 S100A8P05109 93 aa9.07□□□□□ -0.96
USP48-210ENST00000489108 HERVK_113P63121 156 aa9.07□□□□□ -0.96
USP48-210ENST00000489108 CYSLTR1Q9Y271 337 aa9.07□□□□□ -0.96
USP48-210ENST00000489108 A0A1B0GXF2 115 aa9.06□□□□□ -0.96
USP48-210ENST00000489108 TMEM126AQ9H061 195 aa9.06□□□□□ -0.96
USP48-210ENST00000489108 GEMIN7Q9H840 131 aaKnown RBP9.06□□□□□ -0.96
USP48-210ENST00000489108 IGIPA6NJ69 53 aa9.05□□□□□ -0.96
USP48-210ENST00000489108 PRSS47A8MTI9 375 aa9.05□□□□□ -0.96
USP48-210ENST00000489108 ADIRFQ15847 76 aa9.05□□□□□ -0.96
USP48-210ENST00000489108 CBLN2Q8IUK8 224 aa9.05□□□□□ -0.96
USP48-210ENST00000489108 SEC11AP67812 179 aa9.04□□□□□ -0.96
USP48-210ENST00000489108 MT1HP80294 61 aa9.04□□□□□ -0.96
USP48-210ENST00000489108 DAND5Q8N907 189 aa9.04□□□□□ -0.96
USP48-210ENST00000489108 KRTAP19-2Q3LHN2 52 aa9.03□□□□□ -0.96
USP48-210ENST00000489108 COX7B2Q8TF08 81 aa9.03□□□□□ -0.96
USP48-210ENST00000489108 SMIM1B2RUZ4 78 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 M0R378 163 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 NPSP0C0P6 89 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 Q8N8P6 123 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 Q8NBF4 154 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 HIGD2AQ9BW72 106 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 GNB1LQ9BYB4 327 aa9.02□□□□□ -0.97
USP48-210ENST00000489108 PDZD11Q5EBL8 140 aa9.01□□□□□ -0.97
USP48-210ENST00000489108 TCTE3Q8IZS6 198 aa9.01□□□□□ -0.97
USP48-210ENST00000489108 MAP1LC3AQ9H492 121 aa9.01□□□□□ -0.97
USP48-210ENST00000489108 CFC1BP0CG36 223 aa9□□□□□ -0.97
USP48-210ENST00000489108 SPRR4Q96PI1 79 aa9□□□□□ -0.97
USP48-210ENST00000489108 NAT8Q9UHE5 227 aa9□□□□□ -0.97
USP48-210ENST00000489108 VPREB1P12018 145 aa8.99□□□□□ -0.97
USP48-210ENST00000489108 ORMDL2Q53FV1 153 aa8.99□□□□□ -0.97
USP48-210ENST00000489108 A0A1B0GVG6 124 aa8.98□□□□□ -0.97
USP48-210ENST00000489108 SPINK1P00995 79 aa8.98□□□□□ -0.97
USP48-210ENST00000489108 LORP23490 312 aaPredicted RBP8.98□□□□□ -0.97
USP48-210ENST00000489108 XP32Q5T750 250 aa8.98□□□□□ -0.97
USP48-210ENST00000489108 PAPPA-AS1Q5QFB9 102 aa8.97□□□□□ -0.97
USP48-210ENST00000489108 LAMTOR2Q9Y2Q5 125 aa8.97□□□□□ -0.97
USP48-210ENST00000489108 C9JQL5 133 aa8.96□□□□□ -0.98
USP48-210ENST00000489108 PFN2P35080 140 aa8.96□□□□□ -0.98
USP48-210ENST00000489108 SPINK8P0C7L1 97 aa8.95□□□□□ -0.98
USP48-210ENST00000489108 KRTAP10-6P60371 365 aaPredicted RBP8.95□□□□□ -0.98
USP48-210ENST00000489108 TINCRA0A1B0GVN0 87 aa8.94□□□□□ -0.98
USP48-210ENST00000489108 ATP5L2Q7Z4Y8 100 aa8.94□□□□□ -0.98
USP48-210ENST00000489108 TIMM17AQ99595 171 aa8.94□□□□□ -0.98
USP48-210ENST00000489108 SND1-IT1Q9HBX3 110 aa8.94□□□□□ -0.98
USP48-210ENST00000489108 NDUFA12Q9UI09 145 aa8.94□□□□□ -0.98
USP48-210ENST00000489108 IGLV5-45A0A087WSX0 123 aa8.93□□□□□ -0.98
USP48-210ENST00000489108 K7EMI3 77 aa8.93□□□□□ -0.98
USP48-210ENST00000489108 ATP5LO75964 103 aa8.93□□□□□ -0.98
USP48-210ENST00000489108 RAB14P61106 215 aa8.93□□□□□ -0.98
USP48-210ENST00000489108 RPL24P83731 157 aaKnown RBP8.93□□□□□ -0.98
USP48-210ENST00000489108 Q8NDZ9 215 aa8.93□□□□□ -0.98
USP48-210ENST00000489108 KRTAP9-7A8MTY7 169 aa8.92□□□□□ -0.98
USP48-210ENST00000489108 Q8N377 158 aa8.92□□□□□ -0.98
USP48-210ENST00000489108 TOMM6Q96B49 74 aa8.92□□□□□ -0.98
USP48-210ENST00000489108 ZNF706Q9Y5V0 76 aaPredicted RBP8.92□□□□□ -0.98
USP48-210ENST00000489108 ERASQ7Z444 233 aa8.9□□□□□ -0.98
USP48-210ENST00000489108 NXT2Q9NPJ8 142 aaKnown RBP8.9□□□□□ -0.98
USP48-210ENST00000489108 ADCYAP1P18509 176 aa8.89□□□□□ -0.99
USP48-210ENST00000489108 G0S2P27469 103 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms