RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 LINC00173Q6ZV60 143 aa5.71□□□□□ -1.5
HDAC6-232ENST00000489053 NDUFC2-KCTD14E9PQ53 114 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 CXCL5P42830 114 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 C1orf137Q5JT78 98 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 C10orf91Q5T1B1 145 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 SPINK6Q6UWN8 80 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 Q8IZM0 81 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 CDKN2A-AS1Q9UH64 79 aa5.7□□□□□ -1.5
HDAC6-232ENST00000489053 TINCRA0A1B0GVN0 87 aa5.69□□□□□ -1.5
HDAC6-232ENST00000489053 A0A1W2PNN7 141 aa5.69□□□□□ -1.5
HDAC6-232ENST00000489053 M0QXV9 152 aa5.69□□□□□ -1.5
HDAC6-232ENST00000489053 TLX1NBP0CAT3 122 aa5.69□□□□□ -1.5
HDAC6-232ENST00000489053 PMVKQ15126 192 aa5.69□□□□□ -1.5
HDAC6-232ENST00000489053 PHF5AQ7RTV0 110 aaKnown RBP5.69□□□□□ -1.5
HDAC6-232ENST00000489053 F8VRH5 84 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 KIAA0087Q14695 138 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 PDZD11Q5EBL8 140 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 FAM19A3Q7Z5A8 133 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 COX7B2Q8TF08 81 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 CST9LQ9H4G1 147 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 PLA2G2DQ9UNK4 145 aa5.68□□□□□ -1.5
HDAC6-232ENST00000489053 FAM168BA1KXE4 195 aa5.67□□□□□ -1.5
HDAC6-232ENST00000489053 HBDP02042 147 aa5.67□□□□□ -1.5
HDAC6-232ENST00000489053 LINC00614P0C842 121 aa5.67□□□□□ -1.5
HDAC6-232ENST00000489053 PSORS1C2Q9UIG4 136 aa5.67□□□□□ -1.5
HDAC6-232ENST00000489053 LINC01546A6NGU7 62 aa5.66□□□□□ -1.5
HDAC6-232ENST00000489053 ATP5LO75964 103 aa5.66□□□□□ -1.5
HDAC6-232ENST00000489053 SPINK8P0C7L1 97 aa5.66□□□□□ -1.5
HDAC6-232ENST00000489053 LBHQ53QV2 105 aaPredicted RBP5.66□□□□□ -1.5
HDAC6-232ENST00000489053 SMIM1B2RUZ4 78 aa5.65□□□□□ -1.5
HDAC6-232ENST00000489053 C18orf32Q8TCD1 76 aa5.65□□□□□ -1.5
HDAC6-232ENST00000489053 DIRC1Q969H9 104 aa5.65□□□□□ -1.5
HDAC6-232ENST00000489053 XAGE1AQ9HD64 81 aa5.65□□□□□ -1.5
HDAC6-232ENST00000489053 PMCHL1Q16048 86 aa5.64□□□□□ -1.51
HDAC6-232ENST00000489053 IGLV5-45A0A087WSX0 123 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 IGLV7-43P04211 117 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 C9orf129Q5T035 196 aaKnown RBP5.63□□□□□ -1.51
HDAC6-232ENST00000489053 TMEM170BQ5T4T1 132 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 BAGE3Q86Y29 109 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 NKAPP1Q8N9T2 125 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 LINC01600Q96MT4 127 aa5.63□□□□□ -1.51
HDAC6-232ENST00000489053 IGLC3P0DOY3 106 aa5.62□□□□□ -1.51
HDAC6-232ENST00000489053 CHCHD1Q96BP2 118 aaKnown RBP5.62□□□□□ -1.51
HDAC6-232ENST00000489053 HMCN2Q8NDA2 5059 aa5.61□□□□□ -1.51
HDAC6-232ENST00000489053 HSBP1O75506 76 aa5.61□□□□□ -1.51
HDAC6-232ENST00000489053 PFN2P35080 140 aa5.61□□□□□ -1.51
HDAC6-232ENST00000489053 SRSF9Q13242 221 aaKnown RBP eCLIP5.61□□□□□ -1.51
HDAC6-232ENST00000489053 SFTA2Q6UW10 78 aa5.61□□□□□ -1.51
HDAC6-232ENST00000489053 CHTOPQ9Y3Y2 248 aaKnown RBP5.61□□□□□ -1.51
HDAC6-232ENST00000489053 C22orf24Q9Y442 160 aa5.61□□□□□ -1.51
HDAC6-232ENST00000489053 NUPR1O60356 82 aa5.6□□□□□ -1.51
HDAC6-232ENST00000489053 ATP6V1G1O75348 118 aa5.6□□□□□ -1.51
HDAC6-232ENST00000489053 MT1HL1P0DM35 61 aa5.6□□□□□ -1.51
HDAC6-232ENST00000489053 MRPL55Q7Z7F7 128 aaKnown RBP5.6□□□□□ -1.51
HDAC6-232ENST00000489053 CBLN2Q8IUK8 224 aa5.6□□□□□ -1.51
HDAC6-232ENST00000489053 SLC7A5P1Q8MH63 180 aa5.6□□□□□ -1.51
HDAC6-232ENST00000489053 H0Y8G0 127 aa5.59□□□□□ -1.51
HDAC6-232ENST00000489053 H0Y9J4 135 aa5.59□□□□□ -1.51
HDAC6-232ENST00000489053 ZNF22P17026 224 aaPredicted RBP5.59□□□□□ -1.51
HDAC6-232ENST00000489053 IFI27L1Q96BM0 104 aa5.59□□□□□ -1.51
HDAC6-232ENST00000489053 TP73-AS1Q9UF72 201 aa5.59□□□□□ -1.51
HDAC6-232ENST00000489053 A0A096LNJ9 63 aa5.58□□□□□ -1.52
HDAC6-232ENST00000489053 GAGE10A6NGK3 116 aa5.58□□□□□ -1.52
HDAC6-232ENST00000489053 RPL28P46779 137 aaKnown RBP5.58□□□□□ -1.52
HDAC6-232ENST00000489053 URB1-AS1Q96HZ7 61 aa5.58□□□□□ -1.52
HDAC6-232ENST00000489053 ERG28Q9UKR5 140 aa5.58□□□□□ -1.52
HDAC6-232ENST00000489053 IGLV5-39A0A0G2JS06 123 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 C11orf86A6NJI1 115 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 UBE2AP49459 152 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 LINC00158P58513 81 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 RPL24P83731 157 aaKnown RBP5.57□□□□□ -1.52
HDAC6-232ENST00000489053 COX17Q14061 63 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 ZNF625Q96I27 306 aaPredicted RBP5.57□□□□□ -1.52
HDAC6-232ENST00000489053 TNXBP22105 4242 aa5.57□□□□□ -1.52
HDAC6-232ENST00000489053 TRAV12-1A0A0B4J245 112 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 RPL37AP8A6NKH3 93 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 ZNF861PO60384 105 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 TRGC2P03986 189 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 RPL13AP40429 203 aaKnown RBP5.56□□□□□ -1.52
HDAC6-232ENST00000489053 ODF1Q14990 250 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 KRTAP7-1Q8IUC3 87 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 HSPB8Q9UJY1 196 aa5.56□□□□□ -1.52
HDAC6-232ENST00000489053 IGLV1-50A0A075B6I6 118 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 BCE1O60756 84 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 LEPROTL1O95214 131 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 MEIG1Q5JSS6 88 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 KRTAP11-1Q8IUC1 163 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 FAM19A2Q8N3H0 131 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 PRR26Q8N8Z3 221 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 LINC00167Q96N53 147 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 YPEL4Q96NS1 127 aa5.55□□□□□ -1.52
HDAC6-232ENST00000489053 IGKV2-28A0A075B6P5 120 aa5.54□□□□□ -1.52
HDAC6-232ENST00000489053 A0A0U1RRA0 63 aa5.54□□□□□ -1.52
HDAC6-232ENST00000489053 IGKV2D-28P01615 120 aa5.54□□□□□ -1.52
HDAC6-232ENST00000489053 KRTAP10-8P60410 259 aa5.54□□□□□ -1.52
HDAC6-232ENST00000489053 SND1-IT1Q9HBX3 110 aa5.54□□□□□ -1.52
HDAC6-232ENST00000489053 TMEM223A0PJW6 202 aa5.53□□□□□ -1.52
HDAC6-232ENST00000489053 LINC00587B1AMM8 73 aa5.53□□□□□ -1.52
HDAC6-232ENST00000489053 SERF1AO75920 110 aa5.53□□□□□ -1.52
HDAC6-232ENST00000489053 PLNP26678 52 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms