RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 EPRSP07814 1512 aaKnown RBP0.4□□□□□ -2.35
UPF3B-203ENST00000478840 LRP1Q07954 4544 aaKnown RBP0.4□□□□□ -2.35
UPF3B-203ENST00000478840 LCN9Q8WX39 176 aa0.4□□□□□ -2.35
UPF3B-203ENST00000478840 UNC79Q9P2D8 2635 aa0.4□□□□□ -2.35
UPF3B-203ENST00000478840 USF3Q68DE3 2245 aa0.4□□□□□ -2.35
UPF3B-203ENST00000478840 XRN1Q8IZH2 1706 aaKnown RBP0.39□□□□□ -2.35
UPF3B-203ENST00000478840 H0Y9P7 68 aa0.39□□□□□ -2.35
UPF3B-203ENST00000478840 ARMS2P0C7Q2 107 aa0.39□□□□□ -2.35
UPF3B-203ENST00000478840 SPRR1AP35321 89 aa0.39□□□□□ -2.35
UPF3B-203ENST00000478840 USMG5Q96IX5 58 aa0.39□□□□□ -2.35
UPF3B-203ENST00000478840 AHNAKQ09666 5890 aaKnown RBP0.39□□□□□ -2.35
UPF3B-203ENST00000478840 PKDREJQ9NTG1 2253 aa0.39□□□□□ -2.35
UPF3B-203ENST00000478840 IQSEC2Q5JU85 1478 aa0.38□□□□□ -2.35
UPF3B-203ENST00000478840 CCDC141Q6ZP82 1450 aa0.38□□□□□ -2.35
UPF3B-203ENST00000478840 A0A1B0GU69 56 aa0.38□□□□□ -2.35
UPF3B-203ENST00000478840 NCOR2Q9Y618 2525 aa0.38□□□□□ -2.35
UPF3B-203ENST00000478840 PTPRQQ9UMZ3 2332 aa0.37□□□□□ -2.35
UPF3B-203ENST00000478840 ETDBQ3ZM63 59 aa0.37□□□□□ -2.35
UPF3B-203ENST00000478840 C6orf201Q7Z4U5 140 aa0.37□□□□□ -2.35
UPF3B-203ENST00000478840 CSMD3Q7Z407 3707 aa0.37□□□□□ -2.35
UPF3B-203ENST00000478840 IGSF10Q6WRI0 2623 aa0.36□□□□□ -2.35
UPF3B-203ENST00000478840 MUC5BQ9HC84 5762 aaPredicted RBP0.36□□□□□ -2.35
UPF3B-203ENST00000478840 FANCAO15360 1455 aa0.36□□□□□ -2.35
UPF3B-203ENST00000478840 MARF1Q9Y4F3 1742 aaKnown RBP0.36□□□□□ -2.35
UPF3B-203ENST00000478840 GNGT1P63211 74 aa0.36□□□□□ -2.35
UPF3B-203ENST00000478840 Q9H521 79 aa0.36□□□□□ -2.35
UPF3B-203ENST00000478840 DOPEY2Q9Y3R5 2298 aa0.36□□□□□ -2.35
UPF3B-203ENST00000478840 PPRC1Q5VV67 1664 aaKnown RBP0.36□□□□□ -2.35
UPF3B-203ENST00000478840 NRXN1Q9ULB1 1477 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 K7EQZ3 153 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 COX8AP10176 69 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 SMIM11AP58511 58 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 EDC4Q6P2E9 1401 aaKnown RBP0.35□□□□□ -2.35
UPF3B-203ENST00000478840 ANKRD26Q9UPS8 1709 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 NLRP1Q9C000 1473 aa0.35□□□□□ -2.35
UPF3B-203ENST00000478840 ANKRD17O75179 2603 aaKnown RBP0.34□□□□□ -2.35
UPF3B-203ENST00000478840 DEFB107AQ8IZN7 70 aa0.34□□□□□ -2.36
UPF3B-203ENST00000478840 V9GYS6 101 aa0.34□□□□□ -2.36
UPF3B-203ENST00000478840 AKAP12Q02952 1782 aa0.34□□□□□ -2.36
UPF3B-203ENST00000478840 SPRR1BP22528 89 aa0.33□□□□□ -2.36
UPF3B-203ENST00000478840 ATP10BO94823 1461 aa0.33□□□□□ -2.36
UPF3B-203ENST00000478840 CLTCQ00610 1675 aaKnown RBP0.33□□□□□ -2.36
UPF3B-203ENST00000478840 DNAJC13O75165 2243 aa0.33□□□□□ -2.36
UPF3B-203ENST00000478840 SPTBN1Q01082 2364 aaKnown RBP0.32□□□□□ -2.36
UPF3B-203ENST00000478840 HIVEP3Q5T1R4 2406 aa0.32□□□□□ -2.36
UPF3B-203ENST00000478840 D6R8Y8 96 aa0.32□□□□□ -2.36
UPF3B-203ENST00000478840 MUSTN1Q8IVN3 82 aa0.32□□□□□ -2.36
UPF3B-203ENST00000478840 PIEZO2Q9H5I5 2752 aa0.32□□□□□ -2.36
UPF3B-203ENST00000478840 BAZ1AQ9NRL2 1556 aaPredicted RBP0.32□□□□□ -2.36
UPF3B-203ENST00000478840 HRNRQ86YZ3 2850 aaPredicted RBP0.31□□□□□ -2.36
UPF3B-203ENST00000478840 F8WEM9 126 aa0.31□□□□□ -2.36
UPF3B-203ENST00000478840 LEPROTL1O95214 131 aa0.31□□□□□ -2.36
UPF3B-203ENST00000478840 PYY3Q5JQD4 70 aa0.31□□□□□ -2.36
UPF3B-203ENST00000478840 PSENENQ9NZ42 101 aa0.31□□□□□ -2.36
UPF3B-203ENST00000478840 CUX1P39880 1505 aa0.31□□□□□ -2.36
UPF3B-203ENST00000478840 SHPRHQ149N8 1683 aa0.3□□□□□ -2.36
UPF3B-203ENST00000478840 SPINK4O60575 86 aa0.3□□□□□ -2.36
UPF3B-203ENST00000478840 TTC37Q6PGP7 1564 aa0.3□□□□□ -2.36
UPF3B-203ENST00000478840 MUC5ACP98088 5654 aa0.3□□□□□ -2.36
UPF3B-203ENST00000478840 KIAA0556O60303 1618 aa0.3□□□□□ -2.36
UPF3B-203ENST00000478840 DMBT1Q9UGM3 2413 aaPredicted RBP0.29□□□□□ -2.36
UPF3B-203ENST00000478840 PTPN13Q12923 2485 aa0.29□□□□□ -2.36
UPF3B-203ENST00000478840 MDN1Q9NU22 5596 aa0.29□□□□□ -2.36
UPF3B-203ENST00000478840 TARBP1Q13395 1621 aaKnown RBP0.29□□□□□ -2.36
UPF3B-203ENST00000478840 CRIPTQ9P021 101 aa0.29□□□□□ -2.36
UPF3B-203ENST00000478840 KNDC1Q76NI1 1749 aa0.29□□□□□ -2.36
UPF3B-203ENST00000478840 URB1O60287 2271 aaKnown RBP0.29□□□□□ -2.36
UPF3B-203ENST00000478840 ABCA2Q9BZC7 2435 aa0.28□□□□□ -2.36
UPF3B-203ENST00000478840 PVALEFA0A1B0GWK0 134 aa0.28□□□□□ -2.36
UPF3B-203ENST00000478840 PEA15Q15121 130 aa0.28□□□□□ -2.36
UPF3B-203ENST00000478840 C20orf78Q9BR46 151 aa0.28□□□□□ -2.36
UPF3B-203ENST00000478840 HIGD1BQ9P298 99 aa0.28□□□□□ -2.36
UPF3B-203ENST00000478840 NCOR1O75376 2440 aa0.27□□□□□ -2.37
UPF3B-203ENST00000478840 CEP162Q5TB80 1403 aa0.27□□□□□ -2.37
UPF3B-203ENST00000478840 HMGN2P05204 90 aaKnown RBP0.26□□□□□ -2.37
UPF3B-203ENST00000478840 SAMD9Q5K651 1589 aa0.26□□□□□ -2.37
UPF3B-203ENST00000478840 PAPPA2Q9BXP8 1791 aa0.26□□□□□ -2.37
UPF3B-203ENST00000478840 GVINP1Q7Z2Y8 2422 aa0.26□□□□□ -2.37
UPF3B-203ENST00000478840 UBR5O95071 2799 aaPredicted RBP0.26□□□□□ -2.37
UPF3B-203ENST00000478840 LRRC37AA6NMS7 1700 aa0.25□□□□□ -2.37
UPF3B-203ENST00000478840 UBE2D4Q9Y2X8 147 aa0.25□□□□□ -2.37
UPF3B-203ENST00000478840 WNK2Q9Y3S1 2297 aa0.25□□□□□ -2.37
UPF3B-203ENST00000478840 CELSR1Q9NYQ6 3014 aa0.24□□□□□ -2.37
UPF3B-203ENST00000478840 TENM4Q6N022 2769 aa0.24□□□□□ -2.37
UPF3B-203ENST00000478840 I3L3M4 83 aa0.24□□□□□ -2.37
UPF3B-203ENST00000478840 TSC2P49815 1807 aa0.24□□□□□ -2.37
UPF3B-203ENST00000478840 PLIN4Q96Q06 1357 aa0.23□□□□□ -2.37
UPF3B-203ENST00000478840 RABAC1Q9UI14 185 aa0.23□□□□□ -2.37
UPF3B-203ENST00000478840 ABCC3O15438 1527 aa0.23□□□□□ -2.37
UPF3B-203ENST00000478840 C5P01031 1676 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 CPSF4LA6NMK7 179 aaKnown RBP0.22□□□□□ -2.37
UPF3B-203ENST00000478840 IGLC2P0DOY2 106 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 IGLC3P0DOY3 106 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 NMSQ5H8A3 153 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 DEFB105AQ8NG35 78 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 CHD6Q8TD26 2715 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 VWFP04275 2813 aa0.22□□□□□ -2.37
UPF3B-203ENST00000478840 MON2Q7Z3U7 1717 aa0.21□□□□□ -2.38
UPF3B-203ENST00000478840 KMT2DO14686 5537 aa0.21□□□□□ -2.38
UPF3B-203ENST00000478840 K7EP34 96 aa0.21□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms