RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PRYO14603 147 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 RPL32P62910 135 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 MRPL54Q6P161 138 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 C7orf33Q8WU49 177 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 CARD19Q96LW7 228 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 TIMM21Q9BVV7 248 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 PLAC8Q9NZF1 115 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 LINC00474Q9P2X8 69 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 PKHD1L1Q86WI1 4243 aa4.3□□□□□ -1.72
CCDC88A-213ENST00000476903 TRAV13-1A0A0B4J241 112 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 IGKV2-24A0A0C4DH68 120 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 A0A1B0GXF2 115 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 COX7A2LO14548 114 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 PHOX2AO14813 284 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 RPL13AP40429 203 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 RNASE13Q5GAN3 156 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 ATP5L2Q7Z4Y8 100 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 SMIM2Q9BVW6 85 aa4.29□□□□□ -1.72
CCDC88A-213ENST00000476903 A0A096LNI7 61 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 NPYP01303 97 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 HNRNPA3P51991 378 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 SYCNQ0VAF6 134 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 PNRC1Q12796 327 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 Q6ZRU5 148 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 Q6ZUT4 128 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 ORMDL3Q8N138 153 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 STPG4Q8N801 248 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 LINC00526Q96FQ7 95 aa4.28□□□□□ -1.72
CCDC88A-213ENST00000476903 IGLV4-69A0A075B6H9 119 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 APOMO95445 188 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 MT-ND4LP03901 98 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 RAB5AP20339 215 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 RPL39P62891 51 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 PRELID3AQ96N28 172 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 CAMK2N2Q96S95 79 aa4.27□□□□□ -1.73
CCDC88A-213ENST00000476903 LRP1Q07954 4544 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 LOC107984640A0A0U1RRK4 108 aa4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 DDTP30046 118 aa4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 IFI27P40305 119 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 MRPS36P82909 103 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 TMEM136Q6ZRR5 245 aa4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 C5orf38Q86SI9 138 aa4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 LAMTOR2Q9Y2Q5 125 aa4.26□□□□□ -1.73
CCDC88A-213ENST00000476903 IFITM10A6NMD0 228 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 SNRPEP62304 92 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 PRR3P79522 188 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 SPAG11BQ08648 103 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 PMVKQ15126 192 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 OR10D4PQ8NGN7 298 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 FAT3Q8TDW7 4589 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 FAM104AQ969W3 186 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 C2orf48Q96LS8 159 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 MAP1LC3AQ9H492 121 aa4.25□□□□□ -1.73
CCDC88A-213ENST00000476903 TGIF2-C20orf24A0A0A6YYL0 155 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 IGHV3OR16-9A0A0B4J2B5 98 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 GAGE2BQ13066 116 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 OR13C6PQ8NH95 151 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 ORAOV1Q8WV07 137 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 OPRPNQ99935 248 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 PYGO1Q9Y3Y4 419 aa4.24□□□□□ -1.73
CCDC88A-213ENST00000476903 IGLV4-3A0A075B6K6 122 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 LOC389332A0A1B0GUA5 103 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 C20orf202A1L168 122 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 M0R143 59 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 NDUFA1O15239 70 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 RPL18AQ02543 176 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 GAGE2EQ4V326 116 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 CLLU1Q5K131 121 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 GAGE2AQ6NT46 116 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 UQCC3Q6UW78 93 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 TEX43Q6ZNM6 134 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 Q8N8P6 123 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 TMEM141Q96I45 108 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 IMMP2LQ96T52 175 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 MRPL35Q9NZE8 188 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 GAGE2DQ9UEU5 116 aa4.23□□□□□ -1.73
CCDC88A-213ENST00000476903 A0A087WZ39 114 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 K7EMI3 77 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 MT1HL1P0DM35 61 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 CKS1BP61024 79 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 ORMDL2Q53FV1 153 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 SPINK6Q6UWN8 80 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 C2orf66Q6UXQ4 117 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 Q6ZN92 141 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 Q6ZRP5 223 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 NXT2Q9NPJ8 142 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 CYSLTR1Q9Y271 337 aa4.22□□□□□ -1.73
CCDC88A-213ENST00000476903 A0A0J9YXV3 536 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 TMEM218A2RU14 115 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 ADCYAP1P18509 176 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 TAL2Q16559 108 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 C9orf116Q5BN46 136 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 LINC00242Q5T6M2 205 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 FA2HQ7L5A8 372 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 HMCN2Q8NDA2 5059 aa4.21□□□□□ -1.74
CCDC88A-213ENST00000476903 TRAV9-1A0A075B6T8 112 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 A0A1W2PNN7 141 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 TLX1NBP0CAT3 122 aa4.2□□□□□ -1.74
CCDC88A-213ENST00000476903 UBE2D1P51668 147 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms