RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 CHCHD1Q96BP2 118 aaKnown RBP13.47□□□□□ -0.25
LIME1-203ENST00000465591 URB1-AS1Q96HZ7 61 aa13.47□□□□□ -0.25
LIME1-203ENST00000465591 TIMM17AQ99595 171 aa13.47□□□□□ -0.25
LIME1-203ENST00000465591 TLX1NBP0CAT3 122 aa13.46□□□□□ -0.25
LIME1-203ENST00000465591 PHF5AQ7RTV0 110 aaKnown RBP13.46□□□□□ -0.25
LIME1-203ENST00000465591 FAM168BA1KXE4 195 aa13.45□□□□□ -0.26
LIME1-203ENST00000465591 FAM19A3Q7Z5A8 133 aa13.45□□□□□ -0.26
LIME1-203ENST00000465591 LINC01561Q8N1V8 128 aa13.45□□□□□ -0.26
LIME1-203ENST00000465591 HBDP02042 147 aa13.44□□□□□ -0.26
LIME1-203ENST00000465591 SRSF9Q13242 221 aaKnown RBP eCLIP13.44□□□□□ -0.26
LIME1-203ENST00000465591 GAGE2EQ4V326 116 aa13.42□□□□□ -0.26
LIME1-203ENST00000465591 GAGE2DQ9UEU5 116 aa13.42□□□□□ -0.26
LIME1-203ENST00000465591 PSORS1C2Q9UIG4 136 aa13.42□□□□□ -0.26
LIME1-203ENST00000465591 SPINK6Q6UWN8 80 aa13.41□□□□□ -0.26
LIME1-203ENST00000465591 KRTAP7-1Q8IUC3 87 aa13.41□□□□□ -0.26
LIME1-203ENST00000465591 CDKN2A-AS1Q9UH64 79 aa13.41□□□□□ -0.26
LIME1-203ENST00000465591 TRBV30A0A0K0K1B3 111 aa13.4□□□□□ -0.26
LIME1-203ENST00000465591 HSBP1O75506 76 aa13.4□□□□□ -0.26
LIME1-203ENST00000465591 KRTAP11-1Q8IUC1 163 aa13.4□□□□□ -0.26
LIME1-203ENST00000465591 LINC01600Q96MT4 127 aa13.4□□□□□ -0.26
LIME1-203ENST00000465591 PMCHL1Q16048 86 aa13.39□□□□□ -0.27
LIME1-203ENST00000465591 TOMM7Q9P0U1 55 aa13.39□□□□□ -0.27
LIME1-203ENST00000465591 A0A096LNJ9 63 aa13.38□□□□□ -0.27
LIME1-203ENST00000465591 ATP5LO75964 103 aa13.38□□□□□ -0.27
LIME1-203ENST00000465591 FAM19A5Q7Z5A7 132 aaPredicted RBP13.38□□□□□ -0.27
LIME1-203ENST00000465591 HERVK_113P63121 156 aa13.37□□□□□ -0.27
LIME1-203ENST00000465591 SEC11AP67812 179 aa13.37□□□□□ -0.27
LIME1-203ENST00000465591 ODF1Q14990 250 aa13.37□□□□□ -0.27
LIME1-203ENST00000465591 PDZD11Q5EBL8 140 aa13.37□□□□□ -0.27
LIME1-203ENST00000465591 PLA2G2DQ9UNK4 145 aa13.37□□□□□ -0.27
LIME1-203ENST00000465591 NDUFC2-KCTD14E9PQ53 114 aa13.36□□□□□ -0.27
LIME1-203ENST00000465591 SERF1AO75920 110 aa13.36□□□□□ -0.27
LIME1-203ENST00000465591 C9orf129Q5T035 196 aaKnown RBP13.36□□□□□ -0.27
LIME1-203ENST00000465591 PACRGQ96M98 296 aaPredicted RBP13.36□□□□□ -0.27
LIME1-203ENST00000465591 PRSS2P07478 247 aa13.35□□□□□ -0.27
LIME1-203ENST00000465591 PMVKQ15126 192 aa13.35□□□□□ -0.27
LIME1-203ENST00000465591 Q8IZM0 81 aa13.35□□□□□ -0.27
LIME1-203ENST00000465591 GEMIN7Q9H840 131 aaKnown RBP13.35□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BKO60814 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BJP06899 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BOP23527 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BBP33778 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BDP58876 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BCP62807 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST2H2BEQ16778 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 C1orf137Q5JT78 98 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BHQ93079 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BNQ99877 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 HIST1H2BMQ99879 126 aa13.34□□□□□ -0.27
LIME1-203ENST00000465591 C6orf226Q5I0X4 101 aa13.33□□□□□ -0.28
LIME1-203ENST00000465591 CST9LQ9H4G1 147 aa13.33□□□□□ -0.28
LIME1-203ENST00000465591 NDUFA6P56556 154 aa13.32□□□□□ -0.28
LIME1-203ENST00000465591 CKS1BP61024 79 aa13.32□□□□□ -0.28
LIME1-203ENST00000465591 REG3GQ6UW15 175 aa13.32□□□□□ -0.28
LIME1-203ENST00000465591 FAM19A2Q8N3H0 131 aa13.32□□□□□ -0.28
LIME1-203ENST00000465591 LINC00469Q8N7U9 141 aa13.32□□□□□ -0.28
LIME1-203ENST00000465591 SMIM1B2RUZ4 78 aa13.31□□□□□ -0.28
LIME1-203ENST00000465591 KRTAP10-8P60410 259 aa13.31□□□□□ -0.28
LIME1-203ENST00000465591 IGLV5-45A0A087WSX0 123 aa13.3□□□□□ -0.28
LIME1-203ENST00000465591 TINCRA0A1B0GVN0 87 aa13.3□□□□□ -0.28
LIME1-203ENST00000465591 M0QXV9 152 aa13.3□□□□□ -0.28
LIME1-203ENST00000465591 LINC00310P59036 64 aa13.3□□□□□ -0.28
LIME1-203ENST00000465591 IFI27L1Q96BM0 104 aa13.29□□□□□ -0.28
LIME1-203ENST00000465591 LEPROTL1O95214 131 aa13.28□□□□□ -0.28
LIME1-203ENST00000465591 IGLV7-43P04211 117 aa13.28□□□□□ -0.28
LIME1-203ENST00000465591 F8VRH5 84 aa13.27□□□□□ -0.29
LIME1-203ENST00000465591 NUPR1O60356 82 aa13.27□□□□□ -0.29
LIME1-203ENST00000465591 XAGE1AQ9HD64 81 aa13.27□□□□□ -0.29
LIME1-203ENST00000465591 HSPB8Q9UJY1 196 aa13.27□□□□□ -0.29
LIME1-203ENST00000465591 UBR4Q5T4S7 5183 aa13.27□□□□□ -0.29
LIME1-203ENST00000465591 SPINK8P0C7L1 97 aa13.25□□□□□ -0.29
LIME1-203ENST00000465591 COX7B2Q8TF08 81 aa13.25□□□□□ -0.29
LIME1-203ENST00000465591 CXCL5P42830 114 aa13.23□□□□□ -0.29
LIME1-203ENST00000465591 UBE2BP63146 152 aa13.23□□□□□ -0.29
LIME1-203ENST00000465591 TRAV12-1A0A0B4J245 112 aa13.22□□□□□ -0.29
LIME1-203ENST00000465591 IGLC3P0DOY3 106 aa13.22□□□□□ -0.29
LIME1-203ENST00000465591 FABP4P15090 132 aa13.22□□□□□ -0.29
LIME1-203ENST00000465591 COA6Q5JTJ3 125 aaKnown RBP13.22□□□□□ -0.29
LIME1-203ENST00000465591 CHTOPQ9Y3Y2 248 aaKnown RBP13.22□□□□□ -0.29
LIME1-203ENST00000465591 H3BRM9 83 aa13.21□□□□□ -0.29
LIME1-203ENST00000465591 C22orf24Q9Y442 160 aa13.2□□□□□ -0.3
LIME1-203ENST00000465591 DIRC1Q969H9 104 aa13.18□□□□□ -0.3
LIME1-203ENST00000465591 H0Y9J4 135 aa13.17□□□□□ -0.3
LIME1-203ENST00000465591 MAP1LC3CQ9BXW4 147 aa13.17□□□□□ -0.3
LIME1-203ENST00000465591 H0Y8G0 127 aa13.16□□□□□ -0.3
LIME1-203ENST00000465591 ZNF22P17026 224 aaPredicted RBP13.16□□□□□ -0.3
LIME1-203ENST00000465591 IGLV5-39A0A0G2JS06 123 aa13.15□□□□□ -0.3
LIME1-203ENST00000465591 LRP2P98164 4655 aa13.15□□□□□ -0.3
LIME1-203ENST00000465591 C11orf86A6NJI1 115 aa13.14□□□□□ -0.31
LIME1-203ENST00000465591 TMEM170BQ5T4T1 132 aa13.14□□□□□ -0.31
LIME1-203ENST00000465591 PRR26Q8N8Z3 221 aa13.14□□□□□ -0.31
LIME1-203ENST00000465591 KRTAP1-4P0C5Y4 121 aa13.13□□□□□ -0.31
LIME1-203ENST00000465591 S100A6P06703 90 aa13.11□□□□□ -0.31
LIME1-203ENST00000465591 MRPL55Q7Z7F7 128 aaKnown RBP13.11□□□□□ -0.31
LIME1-203ENST00000465591 TP73-AS1Q9UF72 201 aa13.11□□□□□ -0.31
LIME1-203ENST00000465591 LBHQ53QV2 105 aaPredicted RBP13.1□□□□□ -0.31
LIME1-203ENST00000465591 PLNP26678 52 aa13.09□□□□□ -0.31
LIME1-203ENST00000465591 SYS1-DBNDD2H3BUS1 97 aa13.08□□□□□ -0.32
LIME1-203ENST00000465591 DPM2O94777 84 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms