RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ZC2HC1BQ5TFG8 222 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 SMIM1B2RUZ4 78 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 COA6Q5JTJ3 125 aaKnown RBP6.86□□□□□ -1.31
UBR4-208ENST00000459947 SCXQ7RTU7 201 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 C7orf33Q8WU49 177 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 MAP1LC3CQ9BXW4 147 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 TOMM7Q9P0U1 55 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 PMCHL1Q16048 86 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 PLAC8Q9NZF1 115 aa6.86□□□□□ -1.31
UBR4-208ENST00000459947 PLNP26678 52 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HECTD4Q9Y4D8 3996 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BKO60814 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BJP06899 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 ZNF22P17026 224 aaPredicted RBP6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BOP23527 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BBP33778 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BDP58876 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HERVK_113P61574 105 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BCP62807 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST2H2BEQ16778 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BHQ93079 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BNQ99877 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 HIST1H2BMQ99879 126 aa6.85□□□□□ -1.31
UBR4-208ENST00000459947 FAM30AQ9NZY2 134 aa6.84□□□□□ -1.31
UBR4-208ENST00000459947 IGLV5-39A0A0G2JS06 123 aa6.84□□□□□ -1.31
UBR4-208ENST00000459947 A0A1B0GV72 72 aa6.84□□□□□ -1.31
UBR4-208ENST00000459947 C11orf86A6NJI1 115 aa6.84□□□□□ -1.31
UBR4-208ENST00000459947 LBHQ53QV2 105 aaPredicted RBP6.84□□□□□ -1.31
UBR4-208ENST00000459947 TMEM170BQ5T4T1 132 aa6.84□□□□□ -1.31
UBR4-208ENST00000459947 M0R143 59 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 RPL18AQ02543 176 aaKnown RBP6.83□□□□□ -1.32
UBR4-208ENST00000459947 FAM19A2Q8N3H0 131 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 CIRBP-AS1Q8TBR5 109 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 NDUFC2-KCTD14E9PQ53 114 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 LINC00528Q8N1L1 170 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 GAGE2BQ13066 116 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 VAMP3Q15836 100 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 LINC01620Q4KN68 170 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 LINC00526Q96FQ7 95 aa6.83□□□□□ -1.32
UBR4-208ENST00000459947 PKD1P98161 4303 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 A0A096LNI7 61 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 UNQ6190/PRO20217Q6UXQ8 127 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 C6orf48Q9UBA6 75 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 DPM2O94777 84 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 SPINK8P0C7L1 97 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 PLEKHB2Q96CS7 222 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.82□□□□□ -1.32
UBR4-208ENST00000459947 IGKV2-24A0A0C4DH68 120 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 DDTP30046 118 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 GTF2H5Q6ZYL4 71 aa6.82□□□□□ -1.32
UBR4-208ENST00000459947 A0A087WYN8 130 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 LINC00310P59036 64 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 Q5VSD8 79 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 PET117Q6UWS5 81 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 STPG4Q8N801 248 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 HERV-K104P63124 156 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 COX17Q14061 63 aa6.81□□□□□ -1.32
UBR4-208ENST00000459947 TMEM223A0PJW6 202 aa6.8□□□□□ -1.32
UBR4-208ENST00000459947 K7ERU9 68 aa6.8□□□□□ -1.32
UBR4-208ENST00000459947 FABP4P15090 132 aa6.8□□□□□ -1.32
UBR4-208ENST00000459947 RPL37AP61513 92 aaKnown RBP6.79□□□□□ -1.32
UBR4-208ENST00000459947 EPPK1P58107 5090 aaKnown RBP6.79□□□□□ -1.32
UBR4-208ENST00000459947 IGKCP01834 107 aa6.79□□□□□ -1.32
UBR4-208ENST00000459947 NMUP48645 174 aa6.79□□□□□ -1.32
UBR4-208ENST00000459947 SCGB1D1O95968 90 aa6.78□□□□□ -1.32
UBR4-208ENST00000459947 C10orf25Q5T742 122 aa6.78□□□□□ -1.32
UBR4-208ENST00000459947 C2orf82Q6UX34 121 aa6.78□□□□□ -1.32
UBR4-208ENST00000459947 CHTF8P0CG12 524 aa6.78□□□□□ -1.32
UBR4-208ENST00000459947 MYMXA0A1B0GTQ4 84 aa6.77□□□□□ -1.32
UBR4-208ENST00000459947 LEPROTO15243 131 aa6.77□□□□□ -1.32
UBR4-208ENST00000459947 PLA2G2DQ9UNK4 145 aa6.77□□□□□ -1.32
UBR4-208ENST00000459947 SYS1-DBNDD2H3BUS1 97 aa6.77□□□□□ -1.33
UBR4-208ENST00000459947 TP73-AS1Q9UF72 201 aa6.77□□□□□ -1.33
UBR4-208ENST00000459947 NUPR1O60356 82 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 H0Y8G0 127 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 SMR3BP02814 79 aaPredicted RBP6.76□□□□□ -1.33
UBR4-208ENST00000459947 INAFM2P0DMQ5 153 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 C9orf116Q5BN46 136 aaPredicted RBP6.76□□□□□ -1.33
UBR4-208ENST00000459947 ERG28Q9UKR5 140 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 GAGE2EQ4V326 116 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 GAGE2DQ9UEU5 116 aa6.76□□□□□ -1.33
UBR4-208ENST00000459947 LINC01545Q5VT33 79 aa6.75□□□□□ -1.33
UBR4-208ENST00000459947 Q6ZRP5 223 aa6.75□□□□□ -1.33
UBR4-208ENST00000459947 PANO1I0J062 215 aa6.75□□□□□ -1.33
UBR4-208ENST00000459947 LGALS3P17931 250 aaKnown RBP6.75□□□□□ -1.33
UBR4-208ENST00000459947 RPL24P83731 157 aaKnown RBP6.74□□□□□ -1.33
UBR4-208ENST00000459947 ZNF625Q96I27 306 aaPredicted RBP6.74□□□□□ -1.33
UBR4-208ENST00000459947 IGLV5-37A0A075B6J1 123 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 TMEM238C9JI98 176 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 DLEU1O43261 78 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 HAMPP81172 84 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 NDUFA12Q9UI09 145 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 LRP1BQ9NZR2 4599 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 MEIG1Q5JSS6 88 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 BOD1L2Q8IYS8 172 aa6.73□□□□□ -1.33
UBR4-208ENST00000459947 DNAH8Q96JB1 4490 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 A6NJY4 79 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 E9PLD3 99 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 J3QQQ9 107 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms