RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 PTTG1IPP53801 180 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 KRTAP10-4P60372 401 aaPredicted RBP12.62□□□□□ -0.39
COL9A3-202ENST00000452372 C6orf226Q5I0X4 101 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 FAM19A2Q8N3H0 131 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 TOMM7Q9P0U1 55 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 C6orf48Q9UBA6 75 aa12.62□□□□□ -0.39
COL9A3-202ENST00000452372 LINC00310P59036 64 aa12.61□□□□□ -0.39
COL9A3-202ENST00000452372 GAGE2BQ13066 116 aa12.61□□□□□ -0.39
COL9A3-202ENST00000452372 C2orf82Q6UX34 121 aa12.61□□□□□ -0.39
COL9A3-202ENST00000452372 STPG4Q8N801 248 aa12.61□□□□□ -0.39
COL9A3-202ENST00000452372 PKHD1L1Q86WI1 4243 aa12.6□□□□□ -0.39
COL9A3-202ENST00000452372 TRBV30A0A0K0K1B3 111 aa12.6□□□□□ -0.39
COL9A3-202ENST00000452372 SMIM1B2RUZ4 78 aa12.6□□□□□ -0.39
COL9A3-202ENST00000452372 SERF1AO75920 110 aa12.6□□□□□ -0.39
COL9A3-202ENST00000452372 IFI27L1Q96BM0 104 aa12.6□□□□□ -0.39
COL9A3-202ENST00000452372 FAT3Q8TDW7 4589 aa12.59□□□□□ -0.39
COL9A3-202ENST00000452372 TLX1NBP0CAT3 122 aa12.59□□□□□ -0.39
COL9A3-202ENST00000452372 CKS1BP61024 79 aa12.59□□□□□ -0.39
COL9A3-202ENST00000452372 H3BRM9 83 aa12.58□□□□□ -0.4
COL9A3-202ENST00000452372 RPL18AQ02543 176 aaKnown RBP12.58□□□□□ -0.4
COL9A3-202ENST00000452372 TRAV12-1A0A0B4J245 112 aa12.57□□□□□ -0.4
COL9A3-202ENST00000452372 NUPR1O60356 82 aa12.57□□□□□ -0.4
COL9A3-202ENST00000452372 SPINK8P0C7L1 97 aa12.57□□□□□ -0.4
COL9A3-202ENST00000452372 KRTAP29-1A8MX34 341 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-202ENST00000452372 COX7B2Q8TF08 81 aa12.56□□□□□ -0.4
COL9A3-202ENST00000452372 CHTOPQ9Y3Y2 248 aaKnown RBP12.56□□□□□ -0.4
COL9A3-202ENST00000452372 ZNF22P17026 224 aaPredicted RBP12.55□□□□□ -0.4
COL9A3-202ENST00000452372 CXCL5P42830 114 aa12.55□□□□□ -0.4
COL9A3-202ENST00000452372 C11orf86A6NJI1 115 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 J3QL48 77 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BKO60814 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 LEPROTL1O95214 131 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BJP06899 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 S100A1P23297 94 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BOP23527 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BBP33778 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BDP58876 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BCP62807 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST2H2BEQ16778 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.54□□□□□ -0.4
COL9A3-202ENST00000452372 Q6ZRP5 223 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BHQ93079 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BNQ99877 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 HIST1H2BMQ99879 126 aa12.54□□□□□ -0.4
COL9A3-202ENST00000452372 F8VRH5 84 aa12.53□□□□□ -0.4
COL9A3-202ENST00000452372 RPL37AP61513 92 aaKnown RBP12.53□□□□□ -0.4
COL9A3-202ENST00000452372 C9orf116Q5BN46 136 aaPredicted RBP12.53□□□□□ -0.4
COL9A3-202ENST00000452372 IGLV5-39A0A0G2JS06 123 aa12.52□□□□□ -0.41
COL9A3-202ENST00000452372 NDUFC2-KCTD14E9PQ53 114 aa12.52□□□□□ -0.41
COL9A3-202ENST00000452372 A0A1W2PNN7 141 aa12.51□□□□□ -0.41
COL9A3-202ENST00000452372 C7orf33Q8WU49 177 aa12.51□□□□□ -0.41
COL9A3-202ENST00000452372 GAGE2EQ4V326 116 aa12.5□□□□□ -0.41
COL9A3-202ENST00000452372 TMEM170BQ5T4T1 132 aa12.5□□□□□ -0.41
COL9A3-202ENST00000452372 GAGE2DQ9UEU5 116 aa12.5□□□□□ -0.41
COL9A3-202ENST00000452372 HSPB8Q9UJY1 196 aa12.5□□□□□ -0.41
COL9A3-202ENST00000452372 ATP6V1G1O75348 118 aa12.49□□□□□ -0.41
COL9A3-202ENST00000452372 FABP4P15090 132 aa12.48□□□□□ -0.41
COL9A3-202ENST00000452372 ODF1Q14990 250 aa12.47□□□□□ -0.41
COL9A3-202ENST00000452372 HMCN2Q8NDA2 5059 aa12.45□□□□□ -0.42
COL9A3-202ENST00000452372 H0Y8G0 127 aa12.45□□□□□ -0.42
COL9A3-202ENST00000452372 TMEM223A0PJW6 202 aa12.44□□□□□ -0.42
COL9A3-202ENST00000452372 FAM168BA1KXE4 195 aa12.44□□□□□ -0.42
COL9A3-202ENST00000452372 C9orf129Q5T035 196 aaKnown RBP12.44□□□□□ -0.42
COL9A3-202ENST00000452372 COA6Q5JTJ3 125 aaKnown RBP12.42□□□□□ -0.42
COL9A3-202ENST00000452372 HNRNPA3P51991 378 aaKnown RBP12.41□□□□□ -0.42
COL9A3-202ENST00000452372 MAP1LC3CQ9BXW4 147 aa12.41□□□□□ -0.42
COL9A3-202ENST00000452372 OXTP01178 125 aa12.4□□□□□ -0.42
COL9A3-202ENST00000452372 SFTA2Q6UW10 78 aa12.4□□□□□ -0.42
COL9A3-202ENST00000452372 PHF5AQ7RTV0 110 aaKnown RBP12.4□□□□□ -0.42
COL9A3-202ENST00000452372 FAM19A5Q7Z5A7 132 aaPredicted RBP12.4□□□□□ -0.42
COL9A3-202ENST00000452372 KRTAP7-1Q8IUC3 87 aa12.4□□□□□ -0.42
COL9A3-202ENST00000452372 XAGE1AQ9HD64 81 aa12.4□□□□□ -0.42
COL9A3-202ENST00000452372 PLNP26678 52 aa12.39□□□□□ -0.43
COL9A3-202ENST00000452372 PRR3P79522 188 aaKnown RBP12.39□□□□□ -0.43
COL9A3-202ENST00000452372 DPM2O94777 84 aa12.37□□□□□ -0.43
COL9A3-202ENST00000452372 ZNF625Q96I27 306 aaPredicted RBP12.37□□□□□ -0.43
COL9A3-202ENST00000452372 PMCHL2Q9BQD1 86 aa12.36□□□□□ -0.43
COL9A3-202ENST00000452372 SYS1-DBNDD2H3BUS1 97 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 M0QXV9 152 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 IGKCP01834 107 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 PFN2P35080 140 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 COX17Q14061 63 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 ERG28Q9UKR5 140 aa12.35□□□□□ -0.43
COL9A3-202ENST00000452372 SERTAD4-AS1Q5TG53 156 aa12.34□□□□□ -0.43
COL9A3-202ENST00000452372 PSORS1C2Q9UIG4 136 aa12.33□□□□□ -0.44
COL9A3-202ENST00000452372 UBR4Q5T4S7 5183 aa12.33□□□□□ -0.44
COL9A3-202ENST00000452372 PLA2G2DQ9UNK4 145 aa12.32□□□□□ -0.44
COL9A3-202ENST00000452372 C22orf24Q9Y442 160 aa12.32□□□□□ -0.44
COL9A3-202ENST00000452372 PET117Q6UWS5 81 aa12.31□□□□□ -0.44
COL9A3-202ENST00000452372 LEPROTO15243 131 aa12.3□□□□□ -0.44
COL9A3-202ENST00000452372 KRTAP11-1Q8IUC1 163 aa12.3□□□□□ -0.44
COL9A3-202ENST00000452372 PLEKHB2Q96CS7 222 aa12.3□□□□□ -0.44
COL9A3-202ENST00000452372 HERVK_113P61574 105 aa12.29□□□□□ -0.44
COL9A3-202ENST00000452372 LINC01545Q5VT33 79 aa12.29□□□□□ -0.44
COL9A3-202ENST00000452372 TP73-AS1Q9UF72 201 aa12.29□□□□□ -0.44
COL9A3-202ENST00000452372 NDUFA12Q9UI09 145 aa12.29□□□□□ -0.44
COL9A3-202ENST00000452372 C3orf79P0CE67 100 aa12.28□□□□□ -0.44
COL9A3-202ENST00000452372 HERV-K104P63124 156 aa12.28□□□□□ -0.44
COL9A3-202ENST00000452372 UBE2BP63146 152 aa12.28□□□□□ -0.44
COL9A3-202ENST00000452372 LBHQ53QV2 105 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms