RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 FAT3Q8TDW7 4589 aa14.77□□□□□ -0.04
VARS-217ENST00000440048 TRBV30A0A0K0K1B3 111 aa14.77□□□□□ -0.05
VARS-217ENST00000440048 C9orf116Q5BN46 136 aaPredicted RBP14.77□□□□□ -0.05
VARS-217ENST00000440048 Q6ZRP5 223 aa14.77□□□□□ -0.05
VARS-217ENST00000440048 LINC00469Q8N7U9 141 aa14.77□□□□□ -0.05
VARS-217ENST00000440048 OXTP01178 125 aa14.76□□□□□ -0.05
VARS-217ENST00000440048 HBDP02042 147 aa14.76□□□□□ -0.05
VARS-217ENST00000440048 RAB5BP61020 215 aa14.76□□□□□ -0.05
VARS-217ENST00000440048 PMCHL1Q16048 86 aa14.76□□□□□ -0.05
VARS-217ENST00000440048 Q8IZM0 81 aa14.76□□□□□ -0.05
VARS-217ENST00000440048 C6orf226Q5I0X4 101 aa14.75□□□□□ -0.05
VARS-217ENST00000440048 IGLV5-45A0A087WSX0 123 aa14.74□□□□□ -0.05
VARS-217ENST00000440048 CKS1BP61024 79 aa14.74□□□□□ -0.05
VARS-217ENST00000440048 PRR3P79522 188 aaKnown RBP14.74□□□□□ -0.05
VARS-217ENST00000440048 SMIM1B2RUZ4 78 aa14.72□□□□□ -0.05
VARS-217ENST00000440048 GAGE2EQ4V326 116 aa14.72□□□□□ -0.05
VARS-217ENST00000440048 PDZD11Q5EBL8 140 aa14.72□□□□□ -0.05
VARS-217ENST00000440048 GAGE2DQ9UEU5 116 aa14.72□□□□□ -0.05
VARS-217ENST00000440048 NDUFA6P56556 154 aa14.71□□□□□ -0.05
VARS-217ENST00000440048 NDUFC2-KCTD14E9PQ53 114 aa14.7□□□□□ -0.06
VARS-217ENST00000440048 FAM168BA1KXE4 195 aa14.68□□□□□ -0.06
VARS-217ENST00000440048 ATP5LO75964 103 aa14.68□□□□□ -0.06
VARS-217ENST00000440048 IGLC3P0DOY3 106 aa14.68□□□□□ -0.06
VARS-217ENST00000440048 F8VRH5 84 aa14.67□□□□□ -0.06
VARS-217ENST00000440048 SPINK8P0C7L1 97 aa14.67□□□□□ -0.06
VARS-217ENST00000440048 PHF5AQ7RTV0 110 aaKnown RBP14.67□□□□□ -0.06
VARS-217ENST00000440048 COX7B2Q8TF08 81 aa14.67□□□□□ -0.06
VARS-217ENST00000440048 CHCHD1Q96BP2 118 aaKnown RBP14.67□□□□□ -0.06
VARS-217ENST00000440048 CXCL5P42830 114 aa14.66□□□□□ -0.06
VARS-217ENST00000440048 TRGC2P03986 189 aa14.65□□□□□ -0.06
VARS-217ENST00000440048 H3BRM9 83 aa14.64□□□□□ -0.07
VARS-217ENST00000440048 C9orf129Q5T035 196 aaKnown RBP14.64□□□□□ -0.07
VARS-217ENST00000440048 FAM19A5Q7Z5A7 132 aaPredicted RBP14.64□□□□□ -0.07
VARS-217ENST00000440048 BAGE3Q86Y29 109 aa14.63□□□□□ -0.07
VARS-217ENST00000440048 KRTAP7-1Q8IUC3 87 aa14.63□□□□□ -0.07
VARS-217ENST00000440048 ZNF22P17026 224 aaPredicted RBP14.62□□□□□ -0.07
VARS-217ENST00000440048 PSORS1C2Q9UIG4 136 aa14.61□□□□□ -0.07
VARS-217ENST00000440048 SERTAD4-AS1Q5TG53 156 aa14.6□□□□□ -0.07
VARS-217ENST00000440048 COLCA2A8K830 154 aa14.59□□□□□ -0.07
VARS-217ENST00000440048 IGLV5-39A0A0G2JS06 123 aa14.58□□□□□ -0.08
VARS-217ENST00000440048 C11orf86A6NJI1 115 aa14.58□□□□□ -0.08
VARS-217ENST00000440048 HSBP1O75506 76 aa14.58□□□□□ -0.08
VARS-217ENST00000440048 IFI27L1Q96BM0 104 aa14.58□□□□□ -0.08
VARS-217ENST00000440048 M0QXV9 152 aa14.57□□□□□ -0.08
VARS-217ENST00000440048 SRSF9Q13242 221 aaKnown RBP eCLIP14.57□□□□□ -0.08
VARS-217ENST00000440048 FAM19A2Q8N3H0 131 aa14.57□□□□□ -0.08
VARS-217ENST00000440048 XAGE1AQ9HD64 81 aa14.57□□□□□ -0.08
VARS-217ENST00000440048 SPINK6Q6UWN8 80 aa14.56□□□□□ -0.08
VARS-217ENST00000440048 KRTAP11-1Q8IUC1 163 aa14.56□□□□□ -0.08
VARS-217ENST00000440048 CHTOPQ9Y3Y2 248 aaKnown RBP14.56□□□□□ -0.08
VARS-217ENST00000440048 TRAV12-1A0A0B4J245 112 aa14.54□□□□□ -0.08
VARS-217ENST00000440048 C1orf137Q5JT78 98 aa14.54□□□□□ -0.08
VARS-217ENST00000440048 TMEM170BQ5T4T1 132 aa14.54□□□□□ -0.08
VARS-217ENST00000440048 LINC00310P59036 64 aa14.53□□□□□ -0.08
VARS-217ENST00000440048 SERF1AO75920 110 aa14.52□□□□□ -0.09
VARS-217ENST00000440048 MT1HL1P0DM35 61 aa14.52□□□□□ -0.09
VARS-217ENST00000440048 UBE2BP63146 152 aa14.5□□□□□ -0.09
VARS-217ENST00000440048 SCO1O75880 301 aa14.49□□□□□ -0.09
VARS-217ENST00000440048 C22orf24Q9Y442 160 aa14.49□□□□□ -0.09
VARS-217ENST00000440048 NUPR1O60356 82 aa14.47□□□□□ -0.09
VARS-217ENST00000440048 REG3GQ6UW15 175 aa14.47□□□□□ -0.09
VARS-217ENST00000440048 LEPROTL1O95214 131 aa14.46□□□□□ -0.09
VARS-217ENST00000440048 IGLV7-43P04211 117 aa14.46□□□□□ -0.09
VARS-217ENST00000440048 LINC01600Q96MT4 127 aa14.46□□□□□ -0.09
VARS-217ENST00000440048 TMEM223A0PJW6 202 aa14.45□□□□□ -0.1
VARS-217ENST00000440048 TNXBP22105 4242 aa14.45□□□□□ -0.1
VARS-217ENST00000440048 PFN2P35080 140 aa14.44□□□□□ -0.1
VARS-217ENST00000440048 ODF1Q14990 250 aa14.44□□□□□ -0.1
VARS-217ENST00000440048 LBHQ53QV2 105 aaPredicted RBP14.44□□□□□ -0.1
VARS-217ENST00000440048 H0Y8G0 127 aa14.43□□□□□ -0.1
VARS-217ENST00000440048 ZNF625Q96I27 306 aaPredicted RBP14.43□□□□□ -0.1
VARS-217ENST00000440048 TP73-AS1Q9UF72 201 aa14.43□□□□□ -0.1
VARS-217ENST00000440048 ERG28Q9UKR5 140 aa14.43□□□□□ -0.1
VARS-217ENST00000440048 PLA2G2DQ9UNK4 145 aa14.43□□□□□ -0.1
VARS-217ENST00000440048 SFTA2Q6UW10 78 aa14.41□□□□□ -0.1
VARS-217ENST00000440048 MRPL55Q7Z7F7 128 aaKnown RBP14.41□□□□□ -0.1
VARS-217ENST00000440048 FABP4P15090 132 aa14.4□□□□□ -0.1
VARS-217ENST00000440048 HSPB8Q9UJY1 196 aa14.4□□□□□ -0.1
VARS-217ENST00000440048 COX17Q14061 63 aa14.39□□□□□ -0.11
VARS-217ENST00000440048 DIRC1Q969H9 104 aa14.38□□□□□ -0.11
VARS-217ENST00000440048 IGLV5-37A0A075B6J1 123 aa14.37□□□□□ -0.11
VARS-217ENST00000440048 LINC00167Q96N53 147 aa14.37□□□□□ -0.11
VARS-217ENST00000440048 SND1-IT1Q9HBX3 110 aa14.37□□□□□ -0.11
VARS-217ENST00000440048 HMCN2Q8NDA2 5059 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BKO60814 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BJP06899 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BOP23527 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BBP33778 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BDP58876 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BCP62807 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST2H2BEQ16778 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BHQ93079 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BNQ99877 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 HIST1H2BMQ99879 126 aa14.36□□□□□ -0.11
VARS-217ENST00000440048 KRTAP10-8P60410 259 aa14.35□□□□□ -0.11
VARS-217ENST00000440048 H0Y9J4 135 aa14.34□□□□□ -0.11
VARS-217ENST00000440048 NKAPP1Q8N9T2 125 aa14.34□□□□□ -0.11
VARS-217ENST00000440048 GAGE10A6NGK3 116 aa14.33□□□□□ -0.12
VARS-217ENST00000440048 RPL37AP8A6NKH3 93 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms