RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM223A0PJW6 202 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 SMIM1B2RUZ4 78 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 PSCAO43653 123 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 APOMO95445 188 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 GCSHP23434 173 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 LINC01561Q8N1V8 128 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 PAM16Q9Y3D7 125 aa8.02□□□□□ -1.13
PTPRF-208ENST00000437607 STPG4Q8N801 248 aa8.01□□□□□ -1.13
PTPRF-208ENST00000437607 LRCOL1A6NCL2 159 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 E9PLD3 99 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 NMUP48645 174 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 MAJINQ3KP22 176 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 SPATA45Q537H7 98 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 ORAOV1Q8WV07 137 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 PLEKHB2Q96CS7 222 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 C12orf57Q99622 126 aa8□□□□□ -1.13
PTPRF-208ENST00000437607 IGHV1-58A0A0C4DH39 117 aa7.99□□□□□ -1.13
PTPRF-208ENST00000437607 PRSS2P07478 247 aa7.99□□□□□ -1.13
PTPRF-208ENST00000437607 LGALS3P17931 250 aaKnown RBP7.99□□□□□ -1.13
PTPRF-208ENST00000437607 ANKRD39Q53RE8 183 aa7.99□□□□□ -1.13
PTPRF-208ENST00000437607 KRTAP26-1Q6PEX3 210 aa7.99□□□□□ -1.13
PTPRF-208ENST00000437607 TOMM7Q9P0U1 55 aa7.99□□□□□ -1.13
PTPRF-208ENST00000437607 IGLV5-39A0A0G2JS06 123 aa7.98□□□□□ -1.13
PTPRF-208ENST00000437607 LEPROTO15243 131 aa7.98□□□□□ -1.13
PTPRF-208ENST00000437607 SPAG11BQ08648 103 aa7.98□□□□□ -1.13
PTPRF-208ENST00000437607 CFAP161Q6P656 301 aa7.98□□□□□ -1.13
PTPRF-208ENST00000437607 HMCN2Q8NDA2 5059 aa7.98□□□□□ -1.13
PTPRF-208ENST00000437607 J3QQQ9 107 aa7.97□□□□□ -1.13
PTPRF-208ENST00000437607 COX7B2Q8TF08 81 aa7.97□□□□□ -1.13
PTPRF-208ENST00000437607 FAM30AQ9NZY2 134 aa7.97□□□□□ -1.13
PTPRF-208ENST00000437607 IGLV5-52A0A0A0MRZ9 124 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 USP17L23D6RBM5 183 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 FAM229AH3BQW9 127 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 CXCL5P42830 114 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 Q8IZM0 81 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 LINC00518Q8N0U6 118 aa7.96□□□□□ -1.14
PTPRF-208ENST00000437607 UBR4Q5T4S7 5183 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 IGKV2D-26A0A0A0MRZ7 120 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 ZNF561-AS1K7EIQ3 104 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 TSPEAR-AS2P59090 65 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 HIGD2BQ4VC39 106 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 C14orf177Q52M58 125 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 SFTA2Q6UW10 78 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 C15orf56Q8N910 161 aa7.95□□□□□ -1.14
PTPRF-208ENST00000437607 GVQW2A0A096LPI5 108 aaPredicted RBP7.94□□□□□ -1.14
PTPRF-208ENST00000437607 ZNF815PA8K554 130 aa7.94□□□□□ -1.14
PTPRF-208ENST00000437607 Q8N814 137 aa7.94□□□□□ -1.14
PTPRF-208ENST00000437607 NTN5Q8WTR8 489 aaPredicted RBP7.94□□□□□ -1.14
PTPRF-208ENST00000437607 NDUFA12Q9UI09 145 aa7.94□□□□□ -1.14
PTPRF-208ENST00000437607 LECT2O14960 151 aa7.93□□□□□ -1.14
PTPRF-208ENST00000437607 COX8AP10176 69 aa7.93□□□□□ -1.14
PTPRF-208ENST00000437607 CKS1BP61024 79 aa7.93□□□□□ -1.14
PTPRF-208ENST00000437607 C6orf226Q5I0X4 101 aa7.93□□□□□ -1.14
PTPRF-208ENST00000437607 MYMXA0A1B0GTQ4 84 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 TSTD3H0UI37 97 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 NDUFA1O15239 70 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 SLC25A34Q6PIV7 304 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 PCP2Q8IVA1 136 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 TTTY13Q9BZ97 58 aa7.92□□□□□ -1.14
PTPRF-208ENST00000437607 HERV-K104P63124 156 aa7.91□□□□□ -1.14
PTPRF-208ENST00000437607 WFDC2Q14508 124 aa7.91□□□□□ -1.14
PTPRF-208ENST00000437607 SCGB1D4Q6XE38 83 aa7.91□□□□□ -1.14
PTPRF-208ENST00000437607 C14orf144Q96I85 54 aa7.91□□□□□ -1.14
PTPRF-208ENST00000437607 CAMK2N2Q96S95 79 aa7.91□□□□□ -1.14
PTPRF-208ENST00000437607 F8WDY8 70 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 J3QL48 77 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 KIAA0087Q14695 138 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 Q6ZSA8 131 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 LINC00526Q96FQ7 95 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 C2orf48Q96LS8 159 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 PRO1933Q9H354 126 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 UQCR10Q9UDW1 63 aa7.9□□□□□ -1.14
PTPRF-208ENST00000437607 MEIG1Q5JSS6 88 aa7.89□□□□□ -1.15
PTPRF-208ENST00000437607 C2orf82Q6UX34 121 aa7.89□□□□□ -1.15
PTPRF-208ENST00000437607 BOD1L2Q8IYS8 172 aa7.89□□□□□ -1.15
PTPRF-208ENST00000437607 ZNF625Q96I27 306 aaPredicted RBP7.89□□□□□ -1.15
PTPRF-208ENST00000437607 CARD19Q96LW7 228 aa7.89□□□□□ -1.15
PTPRF-208ENST00000437607 KRTAP29-1A8MX34 341 aaPredicted RBP7.88□□□□□ -1.15
PTPRF-208ENST00000437607 DLEU1O43261 78 aa7.88□□□□□ -1.15
PTPRF-208ENST00000437607 TP73-AS1Q9UF72 201 aa7.88□□□□□ -1.15
PTPRF-208ENST00000437607 SYCNQ0VAF6 134 aa7.87□□□□□ -1.15
PTPRF-208ENST00000437607 LINC00528Q8N1L1 170 aa7.87□□□□□ -1.15
PTPRF-208ENST00000437607 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.86□□□□□ -1.15
PTPRF-208ENST00000437607 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
PTPRF-208ENST00000437607 A0A0J9YXY3 114 aa7.86□□□□□ -1.15
PTPRF-208ENST00000437607 TRBV30A0A0K0K1B3 111 aa7.86□□□□□ -1.15
PTPRF-208ENST00000437607 LINC00587B1AMM8 73 aa7.86□□□□□ -1.15
PTPRF-208ENST00000437607 TMEM238C9JI98 176 aa7.86□□□□□ -1.15
PTPRF-208ENST00000437607 HNRNPA3P51991 378 aaKnown RBP7.86□□□□□ -1.15
PTPRF-208ENST00000437607 Q6ZRU5 148 aa7.86□□□□□ -1.15
PTPRF-208ENST00000437607 PLA2G1BP04054 148 aaKnown RBP7.85□□□□□ -1.15
PTPRF-208ENST00000437607 KRTAP10-4P60372 401 aaPredicted RBP7.85□□□□□ -1.15
PTPRF-208ENST00000437607 CIRBPQ14011 172 aaKnown RBP7.85□□□□□ -1.15
PTPRF-208ENST00000437607 UNQ6190/PRO20217Q6UXQ8 127 aa7.85□□□□□ -1.15
PTPRF-208ENST00000437607 MIEN1Q9BRT3 115 aa7.85□□□□□ -1.15
PTPRF-208ENST00000437607 ERG28Q9UKR5 140 aa7.85□□□□□ -1.15
PTPRF-208ENST00000437607 TIMM17BO60830 172 aa7.84□□□□□ -1.15
PTPRF-208ENST00000437607 CNBPP62633 177 aaKnown RBP7.84□□□□□ -1.15
PTPRF-208ENST00000437607 C10orf25Q5T742 122 aa7.84□□□□□ -1.15
PTPRF-208ENST00000437607 C6orf48Q9UBA6 75 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms